Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1551g00004 ATGCGATCAAGAATGGCGTCGCTGCTCCCGAAGGTGGCGATAATTCTGTCGTCTCTCGTGTTCCTCTTTTCTCCCTCGCAATCTGCGGTCTTCAGCGTAGATCTAGGGTCCGAGTCGCTCAAGGTGGCGGTGGTGAACCTAAAACCCGGTCAGATTCCGATTTCGGTCGCGATCAACGAGATGTCGAAGCGGAAATCTCCGGCGCTGGTGTCGTTCCACGACGGCGATCGGCTCCTCGGCGAAGAAGCCGCGGGTCTGGTTGCTCGGTATCCTCAGAAAGTGTATTCACAAGCGAGGGAATTGATAGGGAAACCCTACGACTTTGCGAAGAGGTTTTTGGATTCAATGTACTTGCCTTTCGAAGTGAAGGAGGATTCGCGAGGTGCGGCGAGTTTTGTTGTGGATGACAACGGCGCCGAGTACTCGCCCGAGGAATTGGTGGCTATGATTTTGAGTCACGCAGTGAGTTTAGCAGAGTTCCATTCGAAGGTTCCGATCAAAGACGCAGTGATAACGGTGCCGCCATATTTCGGGCAAGCTGAACGAAGAGGATTGGTGCAGGCAGCACAGTTGGCAGGGATTAATGTTCTTTCATTGATAAATGAGCATTCTGGTGCTGCGTTGCAGTATGGGATTGACAAAGACTTTTCAAACGAGTCAAGGCATGTGATATTCTATGACATGGGTTCAAGCAGTACCTATGCTGCGCTTGTGTATTTCTCTGCCTACAAAGGTAAAGAGTATGGAAAGACAGTGTCAGTGAACCAGTTTCAGGTTAAGGACGTACGTTGGAACCCAGAGTTAGGTGGTCAGAATATGGAATTGCGATTGGTGGAGTATTTTGCTAATGAGTTCAATGCACAAGTTGGTGATGGAATAGATGTGAGGAGATTTCCCAAAGCTATGGCTAAACTGAAGAAACAAGTTAAACGAACAAAAGAAATTCTCAGTGCAAACACAGCAGCTCCCATTTCAGTTGAATCGCTTCATGGTGATGTGGACTTCAGGAGCACAATAACCCGTGAGAAATTTGAAGAGCTCTGTGAAGATATTTGGGAAAAGTCTCTTATACCTGTGAAAGAGGTACTTGAGCATTCAGGCCTGTCAATGGAACAAATATATGCAGTGGAATTGATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGCTAAGCTTCAAGAGTTCCTTGGGAGAAAAGAACTTGATAGGCACCTTGATGCTGATGAAGCAATTGTTCTTGGTGCAGCTCTGCACGCTGCGAATTTAAGTGATGGAATCAAATTGAACCGCAAACTAGGAATGATTGATGGTTCCTTATATGGTTTTGTGGTTGAGTTGAACGGTCCTGATCTTTTGAAAGATGAAAGCTCTAAGCAGTTACTTGTACCACGAATGAAGAAACTCCCGAGTAAGATGTTCAGATCTATTAATCATAATAAAGATTTTGAAGTTTCACTAGCTTATGAAAGTGAACATCATTTGCCAACTGGTGTTACCTCTCCAGAAATTGCTCAATACCAAATATCTGGTTTGACCGATGCAAATGAGAAATACTCATCTCGAAATCTGTCATCCCCCATCAAGGCAAACATACATTTCTCTCTTAGTAGAAGTGGAATTCTTTCCTTGGATCGGGCAGATGCTGTTATTGAAATTACAGAGTGGGTGGAAGTTCCTAGGAAGAATTTGACCGTAGAGAATTCAACTATTTCATCAAACACATCAGATGAATCTGGTGCTAGGAATAGTTCCGAGGAAAGCAATGAAAGTGTGCAAACTGATAGTGGTGGGATTAGTAAGACGTCCAATATTAGTGCAGAGGAGCAAGCTGCTGCAGAACCTGCTACAGAGAGAAAACTGAAAAAGAGGACCTTTAGGGTGCCATTAAAGATTGTTGAGAAGATAACGGGACCTGGGATGTCTCTATCTAAAGACATTCTTGATGAAGCTAAAAGAAAATTACAAGCACTAGACAAAAAAGATGCAGAAAGAAAAAGAACTGCCGAGTTAAAAAATAATTTAGAAGGATATATATATACTACTAAAGAAAAGATTGAAACTCTGGAGGAATTTGAAAAAGTTTCTACCAGTGAGGAACGCCAGTCCTTCGTTGAGAAGCTTGATCAGGTACAAGATTGGTTGTATACAGATGGTGAAGATGCCAATGCTACAGAGTTTCAAGAGCGTCTGGATCAGTTAAAAACTGTTGGAGATCCAATTTTCTTTAGGTTAAAAGAGCTTACAGCTCGACCAGCAGCAGTTGAATATGCCCACAAATACATCGATGAGCTGAAACAGATTATACAAGAGTGGAAAGCAAACAAGTCTTGGCTTCCAAAAGAACGAGTAGATGAGGTTATAAATGATGCCGAAAAGTTAAAGAATTGGCTGGATGAGAAAGAGGTTGAGCAAAAGAATACATCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTTTATTTAAAGGTGTTAGATCTGCAAAATAAGGTTGCCAGTATTAATAGAATTCAAAAGCCCAAGCCTAAGATTCAGAAGCCTATAAAGAACGAAACTGAGAGCAGTGAACAGAACACGGATAATTCCAATTCGACATCATCTGATGATTCCTCTTCAAGTGATCATTCCGCTGACAATTCTGAAGGTCCAAGGGATGAAACGGTTGATGAGCAACTTCACGATGAGTTATGA 2691 0.4266 MRSRMASLLPKVAIILSSLVFLFSPSQSAVFSVDLGSESLKVAVVNLKPGQIPISVAINEMSKRKSPALVSFHDGDRLLGEEAAGLVARYPQKVYSQARELIGKPYDFAKRFLDSMYLPFEVKEDSRGAASFVVDDNGAEYSPEELVAMILSHAVSLAEFHSKVPIKDAVITVPPYFGQAERRGLVQAAQLAGINVLSLINEHSGAALQYGIDKDFSNESRHVIFYDMGSSSTYAALVYFSAYKGKEYGKTVSVNQFQVKDVRWNPELGGQNMELRLVEYFANEFNAQVGDGIDVRRFPKAMAKLKKQVKRTKEILSANTAAPISVESLHGDVDFRSTITREKFEELCEDIWEKSLIPVKEVLEHSGLSMEQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMIDGSLYGFVVELNGPDLLKDESSKQLLVPRMKKLPSKMFRSINHNKDFEVSLAYESEHHLPTGVTSPEIAQYQISGLTDANEKYSSRNLSSPIKANIHFSLSRSGILSLDRADAVIEITEWVEVPRKNLTVENSTISSNTSDESGARNSSEESNESVQTDSGGISKTSNISAEEQAAAEPATERKLKKRTFRVPLKIVEKITGPGMSLSKDILDEAKRKLQALDKKDAERKRTAELKNNLEGYIYTTKEKIETLEEFEKVSTSEERQSFVEKLDQVQDWLYTDGEDANATEFQERLDQLKTVGDPIFFRLKELTARPAAVEYAHKYIDELKQIIQEWKANKSWLPKERVDEVINDAEKLKNWLDEKEVEQKNTSGFSKPAFTSEEVYLKVLDLQNKVASINRIQKPKPKIQKPIKNETESSEQNTDNSNSTSSDDSSSSDHSADNSEGPRDETVDEQLHDEL 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1551g00004 896 Coils Coil 640 660 - -
Gabi1551g00004 896 MobiDBLite consensus disorder prediction 851 873 - -
Gabi1551g00004 896 SUPERFAMILY Actin-like ATPase domain 30 214 IPR043129 -
Gabi1551g00004 896 FunFam Heat shock 70 kDa protein 4 269 354 - -
Gabi1551g00004 896 Gene3D - 96 149 - -
Gabi1551g00004 896 Gene3D - 215 402 - -
Gabi1551g00004 896 SUPERFAMILY Actin-like ATPase domain 220 422 IPR043129 -
Gabi1551g00004 896 Pfam Hsp70 protein 31 742 IPR013126 GO:0005524|GO:0140662
Gabi1551g00004 896 MobiDBLite consensus disorder prediction 874 896 - -
Gabi1551g00004 896 MobiDBLite consensus disorder prediction 835 896 - -
Gabi1551g00004 896 PRINTS 70kDa heat shock protein signature 405 425 - -
Gabi1551g00004 896 PRINTS 70kDa heat shock protein signature 373 389 - -
Gabi1551g00004 896 PRINTS 70kDa heat shock protein signature 169 189 - -
Gabi1551g00004 896 PRINTS 70kDa heat shock protein signature 29 42 - -
Gabi1551g00004 896 PRINTS 70kDa heat shock protein signature 61 73 - -
Gabi1551g00004 896 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 669 751 IPR029048 -
Gabi1551g00004 896 Gene3D Actin; Chain A, domain 4 269 354 - -
Gabi1551g00004 896 Gene3D - 33 420 - -
Gabi1551g00004 896 CDD HYOU1-like_NBD 32 420 - -
Gabi1551g00004 896 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 430 576 IPR029047 -
Gabi1551g00004 896 MobiDBLite consensus disorder prediction 567 619 - -
Gabi1551g00004 896 Gene3D - 642 756 IPR029048 -
Gabi1551g00004 896 PANTHER HSC70CB, ISOFORM G-RELATED 28 866 - -
Gabi1551g00004 896 FunFam Heat shock 70 kDa protein 4 642 754 - -
Gabi1551g00004 896 ProSitePatterns Heat shock hsp70 proteins family signature 3. 376 390 IPR018181 -
Gabi1551g00004 896 FunFam Heat shock 70 kDa protein 17 430 576 - -
Gabi1551g00004 896 MobiDBLite consensus disorder prediction 567 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1551g00004 Gabi-Chr1551 148158 165174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1551g00004 26 547 Calmodulin-binding Proteins AT3G12580 28.922 1.70e-64 227