Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1550g00003 ATGAATGAGGCTGATGGTAGAGTAACTGAGGTAAAGAATGTTCACCGGACTAGTGTAGCAGCCAGTGATAAAGAAAATGGATTATTTTTTGGAAGCTTCACAAGCTTCCACAAGCAGCCAGTGATTTTGATAGACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAGGAGCAAGTTGTGGGCAGTTCCAATTCATCAGCAAGGTTTATATAACATGAGGGCTAACCTCTGTAAAGCATTTTGA 1374 0.4549 MNEADGRVTEVKNVHRTSVAASDKENGLFFGSFTSFHKQPVILIDSAGSYKSRVAGFATAPPCGTLSLMTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKRSKLWAVPIHQQGLYNMRANLCKAF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1550g00003 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Gabi1550g00003 457 ProSiteProfiles Protein kinase domain profile. 98 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00003 457 SMART serkin_6 98 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00003 457 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 371 - -
Gabi1550g00003 457 CDD STKc_CAMK 97 345 - -
Gabi1550g00003 457 Pfam Protein kinase domain 99 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00003 457 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Gabi1550g00003 457 SUPERFAMILY Protein kinase-like (PK-like) 92 382 IPR011009 -
Gabi1550g00003 457 FunFam Maternal embryonic leucine zipper kinase 90 367 - -
Gabi1550g00003 457 Gene3D Transferase(Phosphotransferase) domain 1 89 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1550g00003 Gabi-Chr1550 18134 22352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1550g00003 88 346 EF-hand Containing Proteins AT4G35310 44.074 4.71e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1550g00003 Pkinase 2.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1550g00003 - - gmx:100812729 626.32