Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1550g00001 ATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGTAAGTTTATGGTAGATTATTAA 786 0.4606 MGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLSKFMVDY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1550g00001 261 Pfam Protein kinase domain 12 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00001 261 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi1550g00001 261 SMART serkin_6 11 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00001 261 SUPERFAMILY Protein kinase-like (PK-like) 7 255 IPR011009 -
Gabi1550g00001 261 ProSiteProfiles Protein kinase domain profile. 11 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1550g00001 261 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 255 - -
Gabi1550g00001 261 FunFam Maternal embryonic leucine zipper kinase 3 261 - -
Gabi1550g00001 261 Gene3D Transferase(Phosphotransferase) domain 1 3 260 - -
Gabi1550g00001 261 CDD STKc_CAMK 10 255 - -
Gabi1550g00001 261 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1550g00001 Gabi-Chr1550 1233 3431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1550g00001 1 254 EF-hand Containing Proteins AT2G38910 43.396 7.70e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1550g00001 Pkinase 2.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1550g00001 - - gmx:100812729 432.565