Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi154g00006 ATGGGGAAATCTAGCTCCTGCTTCAGATTGATCACATGTGGCGGTGATGAGGCGGAGAAGGATGATCACCAAGTAGTATCGGAGATCAACGATTCTAACGATAAACGTGGATGGAGTTTCCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGCCATAACTGAGACCCCATCTTCTGCAAATAAGGAGAGTTCAGAACGTACAAGCATTAATTTTCAATCAGTGGCTGAACCTAATGTTGTTGAGAAGATTTATACAACAAATTTCTCTGATGAAAAGCCCCAGTTATCCTCCTTGGCAAGCTCACAAGTGTCAGAAACAATTGTCACTGAAACTGAGGGTAAGGTGGATGTCAATCAACCGGAGTCTGTTGTTATCATTATCCAAGCTGCCATTAGAAGATTTTTGGCTCAGAAAGCACTGCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTCAGGAAGCATGCTGTAGGAACACTGCGTTGTGTTCAAGCTATTGTTAAAATGCAGCTCCTTGTGCGAGCTCGACATGCTAAGCAGTCACATTCAGAAAATCATTTAAATCACAAGGATGGCAAAAATGATGGCTCAAAAACTTTGGGTACTGAATATCATGTCACCAAATCAAATGTGACGCACAATTCCATAGAGAAGCTGCTTAGCAATAGGTTTGCTCGTCAGCTGTTGGAATCAACACCAAAAAACAAACCTATTAATGTCAAGTGTGATCCGTCTAAAGCTAATTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTTCCTCAAAAGATTCTGCAGAGTATAAGAAACCAATTTGTGTGTCAGAACAATCAAACGAAACCAAAGATAGCACTTATGTGTCTCAATTGGAAACAGATATTCAATCTGAAGTTTTTCTTCAGTTTGCTGACTCAAAGCCCACTGTTGGGGATTCATCTCTTCCGTCTGAGAATGAAGAGAAGACAACCACTTATGATGCTAACAACTTCAACTTTCAAGCAAGCCCCTCTACAAAAGATAACTTGGAACAGACTCCTCATGAAAAGACGATTACAGATGATGCTAAAGTAACCTCAACTGAAATTGATTCTTTCCAAAATGAAAAAATGGAATCAGATACAATTCCCTTACAGGAGCCTACTTCTTTTCCTCATAAGCCTGAAATTGATGATGAGCAGTGCAAACAATCTATCAAAACAGTTGCCTCAGACCAACTTGAGACTGAGGGAATGACATTTGCACATGAATCAAGGAAGTTCAGTAATCCTGCATTTATTGCTGCACATTCCAAATTTGAAGAGCTGAGTTTAATGGCAAATTCTGATAGATCAAGCAGTATGTCCAATCAAGTTGCATCAGTTGAATTACAAGCAGACACCACTTCAGTTGTCACTGATACTGCATATAGATCAAAGGAGTTCTTGTCATCTGAGAATTCTACTCCCTATCCTTCCAGAATTGGTGGTTCTGAATGTGGTACTGAACTCTCTATATCTTCAACTCTTGATTCGCCTGACAGATTAGAGGTTGGGATTATGGAAAATGAGCATGATGCCAAAGATTTGGTAGAAGGGATAGGTAATCCTGAAAACAAGATAGATCATGGTGTTGAGGTCAATATTTTGTGTGCCACTCCAACTTCTAACTTACCTTGCTCTGATTTGGATCAATTAGAAATTGTTGATGACATCAGTGGCAAAATGGTTCATTCAGTGGTGCTTGGGGACTCTAAAGAGCCTGCTGTTGAGACGGAGAAAAATGCATCTGACCTGCTGAGAGAACAGGCAGAGACTGTTCTGCAAGATTTTAAGTTGTCTCCGGAAGCTTCACCAGGAAGCCATATGACCATCCCTGAATCCCAAGGAACACCTTCAAGTCAGGTATCCGTGAAACCTAAAGAGAGCAAAACAAAAAAGACTGGATCGAGTAATAGACGCAGAATACTGTCTGCTGGTAACAAGTCTCCTGCAAATGCAAATCATGATTCAGGCTCAAGTGGTAGTAGAGAACAACTGCCTAAAGATCAGCAGAGTGGAAAGAGACGCAATTCCTTTGGCTCAGCAAAACTTGATCATGTTGATCAAGAACCTAGAGATAATAGTAGTGACAATAGTTCTATTCCACATTTCATGCAAGCTACAGAATCTGCTAGGGCCAAGATAAATGCGAATAACTCTCCAAGATCAAGTCCAGATGTACATGACCAAGAAACCCACGTTAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAGGCAGGGTTCTCCCCGTATCCAACAATCGTCTCAAGCCCAGCCGAGCACAAAGGGAAATGGCGTACATGCCCTTAATGAGAGAAAATGGCAGAGGTGA 2379 0.4149 MGKSSSCFRLITCGGDEAEKDDHQVVSEINDSNDKRGWSFRKRSARHRVLSNTAITETPSSANKESSERTSINFQSVAEPNVVEKIYTTNFSDEKPQLSSLASSQVSETIVTETEGKVDVNQPESVVIIIQAAIRRFLAQKALLKSKNVVKLQAAVRGHLVRKHAVGTLRCVQAIVKMQLLVRARHAKQSHSENHLNHKDGKNDGSKTLGTEYHVTKSNVTHNSIEKLLSNRFARQLLESTPKNKPINVKCDPSKANSAWKWLERWMSVSSKDSAEYKKPICVSEQSNETKDSTYVSQLETDIQSEVFLQFADSKPTVGDSSLPSENEEKTTTYDANNFNFQASPSTKDNLEQTPHEKTITDDAKVTSTEIDSFQNEKMESDTIPLQEPTSFPHKPEIDDEQCKQSIKTVASDQLETEGMTFAHESRKFSNPAFIAAHSKFEELSLMANSDRSSSMSNQVASVELQADTTSVVTDTAYRSKEFLSSENSTPYPSRIGGSECGTELSISSTLDSPDRLEVGIMENEHDAKDLVEGIGNPENKIDHGVEVNILCATPTSNLPCSDLDQLEIVDDISGKMVHSVVLGDSKEPAVETEKNASDLLREQAETVLQDFKLSPEASPGSHMTIPESQGTPSSQVSVKPKESKTKKTGSSNRRRILSAGNKSPANANHDSGSSGSREQLPKDQQSGKRRNSFGSAKLDHVDQEPRDNSSDNSSIPHFMQATESARAKINANNSPRSSPDVHDQETHVKKRHSLPGATGRQGSPRIQQSSQAQPSTKGNGVHALNERKWQR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi154g00006 792 SMART iq_5 145 166 IPR000048 GO:0005515
Gabi154g00006 792 SMART iq_5 122 144 IPR000048 GO:0005515
Gabi154g00006 792 MobiDBLite consensus disorder prediction 186 207 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 709 740 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 694 708 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 622 640 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 186 210 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 653 693 - -
Gabi154g00006 792 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Gabi154g00006 792 Pfam IQ calmodulin-binding motif 127 143 IPR000048 GO:0005515
Gabi154g00006 792 MobiDBLite consensus disorder prediction 615 792 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 761 781 - -
Gabi154g00006 792 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Gabi154g00006 792 MobiDBLite consensus disorder prediction 484 507 - -
Gabi154g00006 792 Gene3D - 124 164 - -
Gabi154g00006 792 PANTHER IQ-DOMAIN 5-RELATED 1 763 - -
Gabi154g00006 792 MobiDBLite consensus disorder prediction 52 71 - -
Gabi154g00006 792 Pfam Protein of unknown function (DUF4005) 704 773 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi154g00006 Gabi-Chr154 92347 98586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi154g00006 113 792 IQD Protein Family AT1G19870 37.518 9.73e-108 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi154g00006 - - aprc:113847201 1094.34