Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi154g00001 ATGGCTTCCGTAGAAGAAAAGATTAAAACTTGTGGAGTTGGAGGAGGATTAGTTGTTGGGGGTCAAACATTTGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTCTGGGGTTCGACAGACTTTAAATTCAGAGTTATGGCACGCTTGTGCAGGCCCTCTTGTGTCGTTGCCTCAGGTTGGAAGCCTTGTGTATTATTTCCCTCAGGGACATAGCGAACAGGTGGCAGCTTCAACTAGAAGAACAGCTACCTCACAGATTCCAAACTATCCCAATCTTACATCTCAGTTACTGTGCCAAGTTCAAAATGTCACACTTCATGCAGATAAGGAGACAGACGAAATCTATGCTCAAATGAGTCTTCAACCACTGAATTCTGAAAAAGAAGTCTTTCCTATAACTGAGTTTGGTCTAAACCACAGTAAACATCCCACTGAATTTTTCTGCAAAACTTTGACTGCTAGTGACACCAGCACACATGGTGGCTTTTCGGTTCCACGAAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACCCAAGAACTTGTTGTCCGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGGGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCAGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTTACTATTTTCTACAATCCAAGGGCATGTCCTTCAGAATTTGTTATTCCGTTGGCTAAATACAGAAAAGTTGTATATGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGAGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAAACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTAAAACGGCCGTTACAATCTGGACTTTTGGAAAATGAGTGGGGAACATTGTTAAGAAGACCTTTTATGAGAGCTCCTGAAAATGGAACATTGGAGCTCTCAAACTCGATACCAAATCTCTACTCAGAACATCTGATGAAAATGTTATTTAGACCCCAACTTCTTAACAATAATGGAGCCTTTTTATCGGTCATGCAACAAGAATCTGCTGCTACTAGAGGTCCCTTACAAGAGGTGAAGACAACATTGGCAACAGAGAACCAAAATGTTCATCTTGCAAGTACAGAGAGCATGCCACCAAAAAATCTACATTCTCAGTCAGTACCCGACCAACAACATAATGCCTTTAACATGCATTCACTGATGAGAAGTGACCAACCTGAAAAATTGCATCCTATGGCCAAAATTGATAATCATCTTCCTTCTGGAACATTTACTGATAAGTCAAAATTAGAATCTGAAGTGTTACCTGATCATATGTTTGACTTCCCTTCCATGGAAGGCTGCAACATTGAAAAAATGGCTGCAAATCCTGTTAACCCGAAAATCCTAGCAAGCCAATTGGCATTCCATAATCACAACCAGAGTCCATTACACACTCAAACTAGTCCATGGCCTATGCAGTCTCAACTAGAATCATCGATATCGCATCCTCAACTGATTGATATGTCCCCCCAATCTGATTCTGCTATTGTAAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGATGTATTCTTCTTGCCAACCTTTTTCTGGACAAAACAGATCAACTGGGCCTTCATCAGATTTGCAAGAACATACCTCACTTCAAACTCAAGCAGTGAATCCCCCTTTACCTTCGATGAACCAAGAAGTGTGGGATCATTATGTCAAGAATTTGAAGTTTTTATCTCAACCGGACCAGCTAACATCCATTTGTCAGCCAGGGATGTATGGCCTCAATGGTATATCTAGTTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAACAGTGTAAGTACCACCATGGTTGACCCTTCTACTTCAAGTGCCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGATTTTCAGAATCCACAAGATTGCATGGTTGGAAACTTGAGTTCTAGCCAGGATGTCCAGTCTCAGATAACCTCCGCAAGTCTTGCAGAATCACATGCCTTTTCTCTGCGAGACATCCCTGACAACTCAGGTGGGACATCTTCAAGCCATGTAGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAACAAGTAGCTGCACCCATCCGAACCTACACCAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAGGAGTTGATCCGCGCTATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGACTATGAGAGCGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATATTATCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGGATGAAACTTCTAAACAGTGGAGCATTGCAAGGGATCAATGCTTGA 2832 0.4241 MASVEEKIKTCGVGGGLVVGGQTFVAEMKLLKEMQEHSGVRQTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLTSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEVFPITEFGLNHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKVVYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGTLLRRPFMRAPENGTLELSNSIPNLYSEHLMKMLFRPQLLNNNGAFLSVMQQESAATRGPLQEVKTTLATENQNVHLASTESMPPKNLHSQSVPDQQHNAFNMHSLMRSDQPEKLHPMAKIDNHLPSGTFTDKSKLESEVLPDHMFDFPSMEGCNIEKMAANPVNPKILASQLAFHNHNQSPLHTQTSPWPMQSQLESSISHPQLIDMSPQSDSAIVNGLLPQLDIDEWMMYSSCQPFSGQNRSTGPSSDLQEHTSLQTQAVNPPLPSMNQEVWDHYVKNLKFLSQPDQLTSICQPGMYGLNGISSSNNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSAILDEFCTMKDRDFQNPQDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi154g00001 943 Gene3D - 147 251 IPR015300 -
Gabi154g00001 943 Gene3D - 833 926 - -
Gabi154g00001 943 CDD B3_DNA 149 250 IPR003340 GO:0003677
Gabi154g00001 943 SUPERFAMILY CAD & PB1 domains 841 916 - -
Gabi154g00001 943 Pfam AUX/IAA family 834 924 IPR033389 -
Gabi154g00001 943 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Gabi154g00001 943 SUPERFAMILY DNA-binding pseudobarrel domain 141 279 IPR015300 -
Gabi154g00001 943 Gene3D - 314 386 - -
Gabi154g00001 943 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi154g00001 943 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Gabi154g00001 943 ProSiteProfiles PB1 domain profile. 837 921 IPR000270 GO:0005515
Gabi154g00001 943 FunFam Auxin response factor 148 252 - -
Gabi154g00001 943 FunFam Auxin response factor 832 926 - -
Gabi154g00001 943 FunFam Auxin response factor 314 386 - -
Gabi154g00001 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 927 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi154g00001 943 SMART B3_2 150 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi154g00001 Gabi-Chr154 46837 51981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi154g00001 23 941 B3 DNA Binding Superfamily AT1G19850 58.955 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi154g00001 AUX_IAA 3.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi154g00001 K14486 - gmx:100813003 1674.83