Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1549g00027 ATGTCTGTTGCAGAGGACAAGTCTGGCGTTGTTGTTGTTGTTGTTGACATTGACATTGACATTGACAATGGTTGTTCTCGGAGCGAAGGGTGTTCTGAGTCAGATGAGGAGCAAAGGTCTTCGCAGGAATCTGGTTCCGAGATTGTGGGAATGTCTGAAAAAGAGAGGGGATCCTCTGTGTCTGAGTGCTGTGTGGTATCTGTGGATGTGGATCTGAAGGCACATTTTGCTAAGGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAACCATAACCATGAATCTGGGACTCCCATTGAGCTGGGATGTTCTTGCAAAGATGATTTAGCTGCTGTCCACAAACAATGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCACGCAATGTAACTGGTGTAGTTGAAGTTGAAATGACAGAACAATGGAATGAGGCAAATGATGCCTCCATGGTACCACCAACTGGACCAGCCCCCCCTACAGAAAGTCGAAATTTCTGGCAGGGTCATCGGTTCTTGAATTTCCTTCTTGCATGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTCCACTTCAATGTGCCCTCATGA 627 0.4609 MSVAEDKSGVVVVVVDIDIDIDNGCSRSEGCSESDEEQRSSQESGSEIVGMSEKERGSSVSECCVVSVDVDLKAHFAKVERDCRICHLSMDMTNHNHESGTPIELGCSCKDDLAAVHKQCAEAWFKIKGNKTCEICGSIARNVTGVVEVEMTEQWNEANDASMVPPTGPAPPTESRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1549g00027 208 ProSiteProfiles Zinc finger RING-CH-type profile. 75 143 IPR011016 GO:0008270
Gabi1549g00027 208 PANTHER ZINC FINGER, RING-CH-TYPE 28 207 - -
Gabi1549g00027 208 SUPERFAMILY RING/U-box 80 139 - -
Gabi1549g00027 208 SMART ringv_2 82 137 IPR011016 GO:0008270
Gabi1549g00027 208 MobiDBLite consensus disorder prediction 26 54 - -
Gabi1549g00027 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 145 IPR013083 -
Gabi1549g00027 208 Pfam RING-variant domain 83 136 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1549g00027 Gabi-Chr1549 232878 235015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1549g00027 28 208 C3H Transcription Factor Family AT5G05830 59.259 4.82e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1549g00027 - - gmx:100818979 295.049