Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1549g00026 ATGACCCAACAAGACCAAACCTCCTCGGCCTGCGACGCCGAGTTGTCGGTTGTTGTTGGTGATGGCAGAGTGAAGGGTCCATGGTCCCCTGATGAAGACGCTGTTTTGAGCCGATTAGTAGAGCAGTTTGGGGCGAGGAATTGGGGCATGATCGCTCGAGGAATACCCGGTCGCTCCGGCAAGTCTTGCCGTCTCCGGTGGTGTAATCAGTTGGACCCTTGCGTAAAACGCAGACCCTTCACAGAGGACGAGGATCGTCTTATAGTTGCAGCACATGCAACCCATGGAAACAAATGGGCCGCAATTGCAAGGCTTCTTCCAGGTAGAACGGATAATGCTATTAAGAACCATTGGAATTCTACTCTAAAGCGCAGGTGTATGGAGCTGGGAGGATATGTCCCAGCACACATTTATGTTGCGGAAGATGGTAGCTATGAGAAAACAAAGGCATCCTCTGAAGAAACCATGTCCGTTGGTGATATCAATGCAGTGATGAATCCTACAGAAGTTAGAAATGTTGTTCTGGATAATGAAATTAAACAGAATGAAGACAATCCTCCAAAAAAAGATGGTGCTGAACTGGAGGGACATTCTACTATATGTCGGCCGGTAGCACGTGTTAGTGCATTTAGTATTTACAATCCTCCAAGCAGACCAACAACTGAATCTGCCCATTCAAAGATGATCCAAAAGCAGGACCCTTTAATTCAACCATTCAAAGCTGAAGTAGGAGCCTGCAAGTTATTTGATGATGTTGGCTGTGAGCCCATGATTCCATTGCAATGTGGCCATGGCTGCTGTGCAGCAGAGACAGGGAGAATCCACTCTCATGGTTCACTATTGGGTCCTGAATTTGTTGATTATTTGGAGTCAACCTCATTCTCAAGTCATGAATTGCTCTCTATAACCACGGAATTAAACAATATTGCTTGGATTAAGAGTGGCCTTGAGAATCATGTAGCTTGGGAAACTGAAAATACAGCAAACTTGACAAGGGAGATGCAAGAATTGTTATCAAGGCAGATGCCACGACAACCTTTTGCAATGCCTGCGGAAGTTTGA 1062 0.4586 MTQQDQTSSACDAELSVVVGDGRVKGPWSPDEDAVLSRLVEQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCVKRRPFTEDEDRLIVAAHATHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGGYVPAHIYVAEDGSYEKTKASSEETMSVGDINAVMNPTEVRNVVLDNEIKQNEDNPPKKDGAELEGHSTICRPVARVSAFSIYNPPSRPTTESAHSKMIQKQDPLIQPFKAEVGACKLFDDVGCEPMIPLQCGHGCCAAETGRIHSHGSLLGPEFVDYLESTSFSSHELLSITTELNNIAWIKSGLENHVAWETENTANLTREMQELLSRQMPRQPFAMPAEV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1549g00026 353 Gene3D - 24 76 - -
Gabi1549g00026 353 SMART sant 76 124 IPR001005 -
Gabi1549g00026 353 SMART sant 24 73 IPR001005 -
Gabi1549g00026 353 Gene3D - 79 125 - -
Gabi1549g00026 353 CDD SANT 27 69 IPR001005 -
Gabi1549g00026 353 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Gabi1549g00026 353 PANTHER MYB PROTEIN-RELATED 25 189 - -
Gabi1549g00026 353 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Gabi1549g00026 353 FunFam MYB transcription factor 25 76 - -
Gabi1549g00026 353 CDD SANT 79 122 IPR001005 -
Gabi1549g00026 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 71 IPR017930 -
Gabi1549g00026 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Gabi1549g00026 353 ProSiteProfiles Myb-like domain profile. 20 71 IPR001005 -
Gabi1549g00026 353 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Gabi1549g00026 353 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1549g00026 Gabi-Chr1549 216670 219294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1549g00026 23 347 MYB Transcription Factor Family AT3G55730 46.199 1.64e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1549g00026 Myb_DNA-binding 7.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1549g00026 K09422 - gmx:100781228 479.174