Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1549g00011 ATGGCGATGGTGGCGGTGACGGCAGTGGTTGAGATTATAGTGGTTGATGGAGGTGGTAGTCGTGGTGACGGTGGCATGGTGGGAACTTATCTCCATGACAAACAAATCAAAGCTGCAATGGGTATAAAGATTACTTCCCAGGGGCTTGAACATGCTATAGCTGGCACTGGTTTATATGTGGTGAACCCTGATGATGACTTGGAAGATGTTAAAGAAGCAACAATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAAGAGCGGAGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAGGCATTACTGGAATTTTTGAAAACTCCTGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAATGTAATGCTTGAAAAGACACGAGAGTATGCTACTATATTGGCATTTGATGTCAAAGTCACTCCTGAGGCTAGAGAACTTGCAGATGAATTGGGTGTGAAAATTTTCATCGCTGATATCATTTATCATCTGTTTGATCAATTTAAGGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCGAATTGCATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATATACTTGAAGGCATTGCAAAGGTTGGGACTCCTATTTGTATTCCTTCCAGAGAGTTCATTGACATTGGCCGCATTGCCTCGATTGAGAATAACCATAAACCTGTTGATTATGCGAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAACTCCGAGGAGCATCAAAAAATGTATGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATGTTTCACGGAGATCTATTGATATACTCAAAACTAATTATCGGGATGATCTTAATATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 1005 0.4119 MAMVAVTAVVEIIVVDGGGSRGDGGMVGTYLHDKQIKAAMGIKITSQGLEHAIAGTGLYVVNPDDDLEDVKEATMEDMRSVMSRIDKSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKANVMLEKTREYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCIFNKKDPIVLGVDILEGIAKVGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEHQKMYGRHFEIDDELVSHVSRRSIDILKTNYRDDLNMEEWRLVVKLKNLFKIQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1549g00011 334 Gene3D Translation factors 197 334 - -
Gabi1549g00011 334 FunFam Eukaryotic translation initiation factor 5B 197 334 - -
Gabi1549g00011 334 SUPERFAMILY Translation proteins 201 333 IPR009000 -
Gabi1549g00011 334 Gene3D Translation factors 25 85 - -
Gabi1549g00011 334 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 31 331 IPR015760 -
Gabi1549g00011 334 Pfam Translation-initiation factor 2 68 183 IPR023115 -
Gabi1549g00011 334 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 67 196 IPR036925 -
Gabi1549g00011 334 Gene3D - 86 190 IPR036925 -
Gabi1549g00011 334 FunFam Eukaryotic translation initiation factor 5B 84 190 - -
Gabi1549g00011 334 CDD IF2_aeIF5B_IV 205 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1549g00011 Gabi-Chr1549 97317 101001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1549g00011 28 334 Eukaryotic Initiation Factors Gene Family AT1G76810 82.736 5.84e-173 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1549g00011 K03243 - gmx:100814640 568.155