Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1549g00010 | ATGGAATTCGAAACTCCTTATCTATCTTGTTTCATGGAAAATTCAAATTGGTTTGTCCAAGAGTGCCACAACACAGAATGGACTAGAGAAGAGAATAAGCAGTTTGAAAGTGCCCTTGCCATATATGATGAGGATACACCAGACCGATGGCTGAAGGTGGCATCCATGCTACCTGGGAAAACTGTCTTTGATGTGATCAAGCAGTACAAGGATTTGGAAGAAGATGTCACTGAAATAGAAGCAGGGAGGGTTCCAGTTCCTGGATATCCTACTTCTTGTTTCACCTTGGAGCTTGTTGATAACCAGAATTCTGATGGATGCAGAAAGAGGCCTTCAACTGTTAGGAGTTCTGATCAAGAGAGGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACATAGGCGTTTTCTGATGGGACTTATAAAGTATGGTAAAGGGGACTGGAGAAATATCTCTCGCAATTTTGTGATAACAAAGACTCCAACCCAAGTGGCAAGCCATGCTCAAAAATATTACATAAGGCAAAAACTTTCTGGAGGAAAAGAGAGTAAAAGGAGACCTAGTATCCATGATATCACCATTGTTAATCTTGCAGAAACTACCACATCTGATCAAGACAAGCATCTTTTGTTCAATGAGTCTCACATGCCTTCACCACAACAGAAGCTGACTAGCTTGTCAAAAGTACAACCGGAATGGATTAATCACTACAATGATGGATCTTTCATGGTTTTCAACCCAATTTGTGACGATATGTTCATGTCATCTTCATCTGGTATCTCTTCCAAGACCCTGAAGTTGCAAGGGCAGGATCTCTATGACTGTGCTTTTCATGAGGCTTATGCCAAGCTAAAGACCCCAGGTTTCAGGACGGCTTCTAATGACTTCAATAAGGAAGCTATTTTTGGTATTCATGCACTGTAA | 921 | 0.4148 | MEFETPYLSCFMENSNWFVQECHNTEWTREENKQFESALAIYDEDTPDRWLKVASMLPGKTVFDVIKQYKDLEEDVTEIEAGRVPVPGYPTSCFTLELVDNQNSDGCRKRPSTVRSSDQERKKGVPWTEEEHRRFLMGLIKYGKGDWRNISRNFVITKTPTQVASHAQKYYIRQKLSGGKESKRRPSIHDITIVNLAETTTSDQDKHLLFNESHMPSPQQKLTSLSKVQPEWINHYNDGSFMVFNPICDDMFMSSSSGISSKTLKLQGQDLYDCAFHEAYAKLKTPGFRTASNDFNKEAIFGIHAL | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1549g00010 | 306 | ProSiteProfiles | Myb-like domain profile. | 119 | 171 | IPR001005 | - | |
| Gabi1549g00010 | 306 | MobiDBLite | consensus disorder prediction | 105 | 126 | - | - | |
| Gabi1549g00010 | 306 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 122 | 174 | IPR006447 | GO:0003677 | |
| Gabi1549g00010 | 306 | SUPERFAMILY | Homeodomain-like | 25 | 79 | IPR009057 | - | |
| Gabi1549g00010 | 306 | CDD | SANT | 26 | 72 | IPR001005 | - | |
| Gabi1549g00010 | 306 | MobiDBLite | consensus disorder prediction | 111 | 126 | - | - | |
| Gabi1549g00010 | 306 | Gene3D | - | 125 | 176 | - | - | |
| Gabi1549g00010 | 306 | FunFam | transcription factor MYB1R1 | 125 | 176 | - | - | |
| Gabi1549g00010 | 306 | SMART | sant | 23 | 75 | IPR001005 | - | |
| Gabi1549g00010 | 306 | SMART | sant | 123 | 173 | IPR001005 | - | |
| Gabi1549g00010 | 306 | Gene3D | - | 20 | 86 | - | - | |
| Gabi1549g00010 | 306 | ProSiteProfiles | SANT domain profile. | 127 | 175 | IPR017884 | - | |
| Gabi1549g00010 | 306 | Pfam | Myb-like DNA-binding domain | 126 | 170 | IPR001005 | - | |
| Gabi1549g00010 | 306 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 119 | 175 | IPR017930 | - | |
| Gabi1549g00010 | 306 | SUPERFAMILY | Homeodomain-like | 121 | 175 | IPR009057 | - | |
| Gabi1549g00010 | 306 | CDD | SANT | 126 | 170 | IPR001005 | - | |
| Gabi1549g00010 | 306 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 21 | 221 | IPR043363 | - | |
| Gabi1549g00010 | 306 | FunFam | Transcription factor SRM1 | 19 | 86 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1549g00010 | Gabi-Chr1549 | 88688 | 90977 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Gabi1549g00010 | Myb_DNA-binding | 9.7e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1549g00010 | - | - | gmx:100783469 | 481.485 |