Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1549g00003 ATGTCTGACGCTGTGATCAATGGGTTGGCTGGAGCTGGAGGAGGGATCATTGCTCAGCTCATCACATACCCACTTCAAACCGTAAACACTCGTCAACAAACCGAGCGTGATCCGAAGAAAGGCAAGAAGAGTCAAGGGACCCTCGAGCAAATGTGCCAGGTTGTAAAAGAAGAGGGGTGGGAACGGTTGTATGGAGGCTTGATGCCATCGCTAGTGGGTACAGCTACGTCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAATGCTGAAGCTGCTGCACTAAAGCAGAAGAAGATAGGCATTGGTGATGGATCAGTCGGGATTCTCGCCTCACTTCTTGTTGCTGCTTTATCTGGGTGTGTTAACGTGCTCTTAACAAATCCCATATGGTTAGTTGTTACTCGTATGCAGACGCAGAGAAAAGAGTTAAACAGAACTCCACCAGATCAGGGATTGTTAGTTGTCACCGAGCAAACAAATCTTTCTGCAGTTGAGCCTCTTCCTTATGGAACTAGCCATGTGATTCAAGAAATCTACAATGAAGCTGGAATTTGGGGTTTCTGGAAAGGTGTATTACCAACATTGATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAACCATGTTAAAGAAGTTAAAAAGAAAACGTGCTTGGAGTAAGAAGGGTAGCAACGGGGCAACTGCTTCAGAGATATTTCTTCTTGGAGCTTTAGCTAAGCTTGGAGCTACTATTGTAACTTATCCACTCCTAGTTGTAAAGGCAAGGCTTCAAGCTCGACAGGATGAAACTGGAGACAAGAGGCGCCATTATAAAGGTACATGGGATGCTATTATTAAGATGATGCACTATGAAGGTTTTTATGGATTTTACAAAGGTATGGGCACAAAAATTGTACAAAGTGTGCTGGCTGCTGCTGTGTTGTTCATGATGAAGGAAGAACTAGTTAAGGGAATTCATTTCTTGCTTGCCAAGGATGCTGCCAATACTTGA 1008 0.4335 MSDAVINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKGKKSQGTLEQMCQVVKEEGWERLYGGLMPSLVGTATSQGVYYYFYQIFRNNAEAAALKQKKIGIGDGSVGILASLLVAALSGCVNVLLTNPIWLVVTRMQTQRKELNRTPPDQGLLVVTEQTNLSAVEPLPYGTSHVIQEIYNEAGIWGFWKGVLPTLIMVSNPSIQFMLYETMLKKLKRKRAWSKKGSNGATASEIFLLGALAKLGATIVTYPLLVVKARLQARQDETGDKRRHYKGTWDAIIKMMHYEGFYGFYKGMGTKIVQSVLAAAVLFMMKEELVKGIHFLLAKDAANT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1549g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
Gabi1549g00003 335 SUPERFAMILY Mitochondrial carrier 3 319 IPR023395 -
Gabi1549g00003 335 MobiDBLite consensus disorder prediction 29 48 - -
Gabi1549g00003 335 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 325 IPR044712 GO:0006862|GO:0055085
Gabi1549g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 323 IPR018108 -
Gabi1549g00003 335 Pfam Mitochondrial carrier protein 237 322 IPR018108 -
Gabi1549g00003 335 Pfam Mitochondrial carrier protein 6 90 IPR018108 -
Gabi1549g00003 335 Pfam Mitochondrial carrier protein 109 221 IPR018108 -
Gabi1549g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 217 IPR018108 -
Gabi1549g00003 335 Gene3D Mitochondrial carrier domain 9 327 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1549g00003 Gabi-Chr1549 53763 59091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1549g00003 24 318 Chloroplast and Mitochondria Gene Families AT2G47490 29.900 2.55e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1549g00003 K13354 - gmx:100775784 569.311