Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1548g00002 ATGGAGACACCAAAGGGGAACCAAATGAACACTCCCTCCCCTAACTTAGAGGATTCACCTGTGTTCAACTATATCAATAATTTATCTCCTTTGAAGCCCCTTAAGTCTCTTAACAATATTCAGACGTTCAATTCACTCATCTTTTCATCCCCTCCTCGTGTTTTCGCATCACCCCATGCTAGCTGTTTCAACTCATTTGGCACATCAAAGGCTAAGGTTTCTTCAGAATATGGAAATGATGTTTACTCAAGTGATCTGGCTCTTGCAGATTCTACTCATGCGCATCATTGCTCAAGAGAATTGTATGAAATTACCACCAATAATGATGGGATAATGCACGTTGTTGATTCAGTTGCTTCTGGTTCTGAACTTGATATCCAAGATCATTGTTTTGAGCCAATAGCAGCCACAGTCACAGACCATACACATCAGGACAATCTTGCCAATGTTGCTTTGATGATGAGCAATCCAAATGCGAAGACAAATGATGAGCTTGTTTTGCACCATGGTTCATGGATACGCTGTATAGACTTTGAAGTGGCCAGTGAGCAAAGAAATAAGAATTCAAACACTACATCACAGTATGTTGAGAAGAATGTTGCTAATGAAAACCATCTTCTTCTTCCTACGAATTGCAATGGGAATTCACAAAGTTTCACTTTGCCAGAAATTAGTTCACACTTGAACACACTTCCAAGCTTAAAAGATTACAAAGGTGTCACTTCTTCCTTCAATCTCTCTATAAGCCAAGAACATGAGCATTCACAATTGGTAACTCAATCATCCAAAAGAGAATTGGATCCACCAGAGAATCAAGTTCAACCAGCAGAAGAAGATTTCAATCAGAACAGCTCCAACAAGAAAAGGCGAAAAATGGAAGAAACTGATCAGGGATGCAAACGTTGCAACTGCACGAAATCAAAATGTTTGAAGCTTTTTTGTGAGTGCTTTGCTTCTGGTGTCTATTGCTTAGAACCTTGTGGTTGTAAGGATTGCTTCAACAAACCAATTCATGAAGATACTCTTATTCTAACTCGAAAGAAGATTGAATCTCAAAACCCAAATGCATTCGATTCTAAAGTCACTGGAACCGGGGATGATGATCAGAAAAATACTCCAGCATCAGGTTCAGCTCGACATAAAAGAGGATGCAGCTGCAAGAAATCACGTTGCTTGAAGAAATATTGTGAATGTTTTCAGAATTGTGTTGGTTGTTCTATTAATTGCAGATGTAAAGGTTGCAAGAACACATATGGTAGAAAGAATATAAAGGATGGTTCTCCTCCAATAGGAATAGAAGCTGATACAGAAGAACCACAAACATGTGAAAAAATGTAA 1338 0.3864 METPKGNQMNTPSPNLEDSPVFNYINNLSPLKPLKSLNNIQTFNSLIFSSPPRVFASPHASCFNSFGTSKAKVSSEYGNDVYSSDLALADSTHAHHCSRELYEITTNNDGIMHVVDSVASGSELDIQDHCFEPIAATVTDHTHQDNLANVALMMSNPNAKTNDELVLHHGSWIRCIDFEVASEQRNKNSNTTSQYVEKNVANENHLLLPTNCNGNSQSFTLPEISSHLNTLPSLKDYKGVTSSFNLSISQEHEHSQLVTQSSKRELDPPENQVQPAEEDFNQNSSNKKRRKMEETDQGCKRCNCTKSKCLKLFCECFASGVYCLEPCGCKDCFNKPIHEDTLILTRKKIESQNPNAFDSKVTGTGDDDQKNTPASGSARHKRGCSCKKSRCLKKYCECFQNCVGCSINCRCKGCKNTYGRKNIKDGSPPIGIEADTEEPQTCEKM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1548g00002 445 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 100 IPR044522 GO:0003700
Gabi1548g00002 445 MobiDBLite consensus disorder prediction 354 382 - -
Gabi1548g00002 445 MobiDBLite consensus disorder prediction 254 290 - -
Gabi1548g00002 445 MobiDBLite consensus disorder prediction 354 378 - -
Gabi1548g00002 445 MobiDBLite consensus disorder prediction 425 445 - -
Gabi1548g00002 445 MobiDBLite consensus disorder prediction 254 268 - -
Gabi1548g00002 445 ProSiteProfiles CRC domain profile. 298 419 IPR005172 -
Gabi1548g00002 445 SMART CXC_2 379 420 IPR033467 -
Gabi1548g00002 445 SMART CXC_2 297 338 IPR033467 -
Gabi1548g00002 445 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 382 417 IPR005172 -
Gabi1548g00002 445 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 300 335 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1548g00002 Gabi-Chr1548 21501 24028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1548g00002 16 427 CPP Transcription Factor Family AT4G14770 38.878 2.06e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi1548g00002 TCR 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1548g00002 - - gmx:100804447 382.489