Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1545g00003 ATGGAAGAAGCTCTACGGCGACTCAACGGAATGACCAATATTCAAGTACCCGACCAGCATGACTCCATCTCCGACAACCACCACCAGAAGAAGTGTGCCACCGCCGCCAATAAGAGAGCCTTGAGAGAAAGCGGTGGCTCTGGCGGCGGCACAATGAGGTACCGTGGAGTGAGGCGCAGGCCGTGGGGCCGTTACGCCGCAGAGATAAGGGACCCACAGTCGAAGGAGCGCCGCTGGCTCGGAACCTTCGACACGGCTGAGGAAGCAGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGGGGCGTTAAAGCTCGAACTAATTTTGTGTACCCTGATTCTCCTCCTCACCATCACCCTTCTTTTACAGAACAACACCTTTTCCAACACTTCAACATTCCCAAGCAATCTCATCATACCCCTAAGTTCATCCAAAATCGCCATTTGAGTTCTTCAAACGGTGGTGGCGGTGGTGGTGATTTCTCAGGTAGCACTGTTGTGTCTGCATCATCAACCCAACCCAACACTTCCCTAAACATGCTTCTATTTCGTGACTTCCTCAACTCCTCTTCCACAAAACCGTGTTTGGTTTCTTCTTCTTCTTCTGCTCAGCAGTTTTACAACAAGGGTAGTAGTTCTTCTTCTTCTTCTTCAATCCCTTCATCACCCACTTGTTCTTGTTATTGTTCATCTTCTTCATTCTTATTACCCGTGTCAAACTGTCTCCAAGGTTGCTGTATGGTAAATTCTTCTTCGGGAAATGATAACATGAATCACAGTTATGGTGTTATCAATGCCAATAGAACAGAAGTCTCTGAAACTATTAATGAAGACTCGGAGTTCTTTCCCAGAGAACCTACAGGCTCTGGATTATTGGAAGAGATAGTTCATAGGTTCTTACCAAAATCAAAACCCAAGACCAATGATTGCGAGAATAAGCTAAAAACAGAGACTTTATCCATCACAGAGTCATTCCCTCAACCAATATCTGATCACATGCCCTTTTCTGCATCTCAGTGTTATGATGATACGAGGATGAGGCTTCCCAAGATCGAGGGTTTTGGTGTCTCTTTCGATCACCAAGGTTTCCCCATGCAAAAATTTGACACTCTTAATGCGTTTAACACCATGCAAGCAATGCCTATGGGGGAAAACCAGTTTATGATGAATCATGCAGAGTGCTCTATCATGGAAGATATTTTTCAATATCCAGAGATTTTTAATTCTTTTGCAGCCAGGATGCAAAATGCTTAA 1254 0.4577 MEEALRRLNGMTNIQVPDQHDSISDNHHQKKCATAANKRALRESGGSGGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDSPPHHHPSFTEQHLFQHFNIPKQSHHTPKFIQNRHLSSSNGGGGGGDFSGSTVVSASSTQPNTSLNMLLFRDFLNSSSTKPCLVSSSSSAQQFYNKGSSSSSSSSIPSSPTCSCYCSSSSFLLPVSNCLQGCCMVNSSSGNDNMNHSYGVINANRTEVSETINEDSEFFPREPTGSGLLEEIVHRFLPKSKPKTNDCENKLKTETLSITESFPQPISDHMPFSASQCYDDTRMRLPKIEGFGVSFDHQGFPMQKFDTLNAFNTMQAMPMGENQFMMNHAECSIMEDIFQYPEIFNSFAARMQNA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1545g00003 417 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gabi1545g00003 417 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Gabi1545g00003 417 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Gabi1545g00003 417 CDD AP2 53 109 IPR001471 GO:0003700|GO:0006355
Gabi1545g00003 417 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 219 - -
Gabi1545g00003 417 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Gabi1545g00003 417 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Gabi1545g00003 417 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gabi1545g00003 417 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gabi1545g00003 417 MobiDBLite consensus disorder prediction 146 169 - -
Gabi1545g00003 417 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1545g00003 Gabi-Chr1545 28431 29684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1545g00003 1 327 AP2-EREBP Transcription Factor Family AT1G24590 34.706 7.85e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1545g00003 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1545g00003 - - aprc:113860142 423.32