Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1544g00031 | ATGGAAGCTCTGTTGTGCAGAAAACTGGGTGATCCAACGGTGTGTGTGGAAGACGATTCTAGCCCAATATTTGTGTCAAAGAATCACCCAATTCCTGAACTGGATTCTCCCACTGCGGTGAGAGTGAGGATTAAAGCCACAAGCTTGAATTTTGCAAATTACTTGCAGATACTGGGCAAGTACCAAGAGAAAGCCCCTTTGCCATTTATCCCTGGATCCGATTATTCTGGAATCGTTGATGCCGTTGGCCCTAAAGTTTCCAACTTTCGAATTGGGGACCCCGTTTGTTCCTTCGCCCCTCTTGGCTCTTTTGCTCAGTTCATCGTTGTTGACCAGTCCCAATTGTTTCGAGTGCCAGAAGGTTGTGATCTTGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCTCATGTAGCACTTGTCCATAGAGCTCAATTAACCTCTGGTCAGGTGTTGCTGGTTTTGGGTGCAGCAGGAGGTGTGGGCCTTGCAGCTGTGCAAATTGGAAAAGCATGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGCTCTTGAAATCGCTTGGTGTTGATCATGTAGTGGACTTGAGTAATGAAAATGTTACTCAGAGTGTCAATGAGTTTCTTAAAGCTAGAAGGCTTAAAGGGATTGATGTCTTGTATGACCCGGTTGGAGGCAAGCTTACTAAAGAATCTTTGCGGCTTCTGAAATGGGGAGCTAACATTCTGGTAATTGGGTTTGCAAGTGGAGAGATTCCTGTCATCCCTGCCAACATAGCTCTTGTTAAGAATTGGACAGTGCATGGCCTTTATTGGGGTAGCTATAAAATACATCGGCCGGCTGTTCTTGAAGATTCTCTGAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCCATCCACATTTCTCATTCTTACCGCCTTTCAGAGGCCCACCTCGCATTTTCTGCCATCAAGGATAGGAAAGTTATTGGGAAGGTGATGATTGTTTTTGATGACAAATTTACAAGATCTAAGCTCTAA | 1041 | 0.4553 | MEALLCRKLGDPTVCVEDDSSPIFVSKNHPIPELDSPTAVRVRIKATSLNFANYLQILGKYQEKAPLPFIPGSDYSGIVDAVGPKVSNFRIGDPVCSFAPLGSFAQFIVVDQSQLFRVPEGCDLVAAGALAVAFGTSHVALVHRAQLTSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLSNENVTQSVNEFLKARRLKGIDVLYDPVGGKLTKESLRLLKWGANILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPAVLEDSLKELLSWLARGLISIHISHSYRLSEAHLAFSAIKDRKVIGKVMIVFDDKFTRSKL | 346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1544g00031 | 346 | Pfam | Alcohol dehydrogenase GroES-like domain | 38 | 97 | IPR013154 | - | |
| Gabi1544g00031 | 346 | SUPERFAMILY | GroES-like | 25 | 151 | IPR011032 | - | |
| Gabi1544g00031 | 346 | Gene3D | - | 133 | 280 | - | - | |
| Gabi1544g00031 | 346 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 122 | 288 | IPR036291 | - | |
| Gabi1544g00031 | 346 | ProSitePatterns | Quinone oxidoreductase / zeta-crystallin signature. | 150 | 171 | IPR002364 | GO:0008270|GO:0016491 | |
| Gabi1544g00031 | 346 | CDD | QOR1 | 1 | 335 | - | - | |
| Gabi1544g00031 | 346 | PANTHER | SHORT-CHAIN DEHYDROGENASE/REDUCTASE | 1 | 336 | - | - | |
| Gabi1544g00031 | 346 | Gene3D | - | 35 | 331 | - | - | |
| Gabi1544g00031 | 346 | Pfam | Zinc-binding dehydrogenase | 161 | 300 | IPR013149 | - | |
| Gabi1544g00031 | 346 | SMART | PKS_ER_names_mod | 17 | 335 | IPR020843 | GO:0016491 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1544g00031 | Gabi-Chr1544 | 185966 | 190178 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1544g00031 | 68 | 266 | Monolignol Biosynthesis Gene Families | AT1G72680 | 25.424 | 5.77e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1544g00031 | K00344 | - | gmx:100817700 | 599.742 |