Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1544g00020 ATGCAAAGGAGAGGTAAGGTGAATGCATCATTGGGAAATTATAAAGATGCAATCTACGACCTAAATGTGGCTAAGAGTGTGGAGTCATCAATAGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTTTTGACCAATGCAAGAGCACAAGCACAGTAGTACAGCATAAGGAGAATAGCTTGAAGACAGTGGGTGAGATGCCCCGAATAAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGTCCTCATGTGACATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATCAAAGCAATGCCGGGAAACCCATTGCCATTTTTGCTTGAATGAACTACCTGCTGATAGAGTTCCTTGTAGTTTGTGTTCAATACCATTTTATTGCTCCAACCAATGTCAAATACGGGCAGGCGGGCAAATGTTCAGGATTTATCCAGAAGAAAATGCCATTCTTAAAAATTTACCCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAAGGCAATGATTCTGAACTAGAAATTGATGATATTACAGAACATAACCATGAATGTCAAGGTGTACATTGGCCTGCAGTACTTCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCTAGGTTTTCACTGAAAAGCACGTCTGAAGATATTTCAAACTTTGTTGAAAGGCTGGAGCTTTCTCATTGTTACAATCATATGCCATCTGAAAGCAAATTGGATTCACATATATACGCAATGGTGTTATTATACTGTCTTCAACACTCTTATGGCACTATATTTTCCATAGATGGAATCTCTATGTCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCCCGTGGACGATCAGATCAGTTTGGAGAATTTCCATTTCAATCCAGTGCATATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTATTTCACGTACACTCTATTTACGAACCACAAAAGTTGTAGCAGCTGGGTGTCAGCTAGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGATGAATACATATTTCATTGTCAGTGTACTGGTTGTTCAGAAGTCAATCTGTCTGACATTGTCCTCAATGCTTTTCATTGTGTCAATACAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGACTGTGAAAAGCAGAAAATCAAACACTTCTCTATTGATGATAAAGTTGACAAGAATGATGACATTTATGAAGTTTGTCTTCATGCATTAAACGAAAATGACGCCTCCATTCATATTCAACCTGGATACTGTTTGAAATGTGGCTCTTACTGTGAGTTGGAGTCTTCACATGCTGCAGTTGATAAAGCTTTAATAACCATAAAAAGGTTGCAGGATGCAATACTGTCAAGAGAGATTTCAAATACTACTATTTCAGATGCTTTGAGATCTCTTCGTTTGCTGAGATCAAATTTGCATGCATACAACAAACTTATTGCAGAGGCAGAGGACAACCTTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAACCATCTATGGGCCATTGTAAAGCATCTATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATGGTGCTGCTGTGGACAGCATAAGTCGAATAGGTGATATCTTCTCGCGTTTTTATGGACTTCATGCAGACTTGGTCTTCCCATATCTTCAATATCTTAGGAGAGAGATTGAGAATTTTTCAGTGAAGGCTCTCCAATCAAATGCTTTTCCAGCAAAATGA 1953 0.3845 MQRRGKVNASLGNYKDAIYDLNVAKSVESSIGGKRQIESELKIIFDQCKSTSTVVQHKENSLKTVGEMPRIKLQCVSMPDKGRGMVSSCDISPGSLVHAEEPYAMIISKQCRETHCHFCLNELPADRVPCSLCSIPFYCSNQCQIRAGGQMFRIYPEENAILKNLPSDLGEYAAEVIQGNDSELEIDDITEHNHECQGVHWPAVLPSEIVLAGRILARFSLKSTSEDISNFVERLELSHCYNHMPSESKLDSHIYAMVLLYCLQHSYGTIFSIDGISMSQVVIIISQIKVNCMTVVRLKSIDARGRSDQFGEFPFQSSAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFISRTLYLRTTKVVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYIFHCQCTGCSEVNLSDIVLNAFHCVNTNCSGAVLESRVLDCEKQKIKHFSIDDKVDKNDDIYEVCLHALNENDASIHIQPGYCLKCGSYCELESSHAAVDKALITIKRLQDAILSREISNTTISDALRSLRLLRSNLHAYNKLIAEAEDNLAQAFCLVGELQPSMGHCKASIQILEKLYDPDDIVIAYELVKLSSIQLSLDDGAAVDSISRIGDIFSRFYGLHADLVFPYLQYLRREIENFSVKALQSNAFPAK 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1544g00020 650 ProSiteProfiles SET domain profile. 69 377 IPR001214 GO:0005515
Gabi1544g00020 650 Gene3D Tetratricopeptide repeat domain 385 645 IPR011990 GO:0005515
Gabi1544g00020 650 Gene3D SET domain 272 376 IPR046341 -
Gabi1544g00020 650 Coils Coil 526 546 - -
Gabi1544g00020 650 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 636 - -
Gabi1544g00020 650 Pfam SET domain 82 377 IPR001214 GO:0005515
Gabi1544g00020 650 SUPERFAMILY SET domain 60 407 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1544g00020 Gabi-Chr1544 123386 137016 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1544g00020 SET 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1544g00020 K24634 - gmx:100783548 1053.89