Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1544g00019 ATGGAGACTCTGAAAGCTGCCATTCCAGAAGCCCTTAAGCGAGTGATCGGAGAGAGCACTGTCGATGATCTTCGCAGCACATGTTCTTCTCTTCACCGCTTTTTGGTTCATTTCGAGCCATTTCAGAAGATGGTGGCCGAATTGGCGGACCCTAAGTATGCTCTTTGCGGTAAGAGTAAGGACGCTGCGTTGAAATCCAAGCAGCTTGGCAATCAGTACTTCTCCAACGCAAATTATGCGAAGGCTTTGTATTCCTATACTCAGGCATTGCGCAGGGCACCTTTAGAGGCTGGTAACATGGAAAATAATCTGGTGGCAATGTTGTATATCAACAGAGCTACTGTATTACATAAAATGAGTCTTTTAATAGAATGTTTGCGAGATTGCTCCCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGTGAATGCATCATTGGGAAATTATAAAGATGCAATCTACGACCTAAATGTGGCTAAGAGTGTGGAGTCATCAATAGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTTTTGACCAATGCAAGAGCACAAGCACAGTAGTACAGCATAAGGAGAATAGCTTGAAGACAGTGGGTGAGATGCCCCGAATAAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGTCCTCATGTGACATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATCAAAGCAATGCCGGGAAACCCATTGCCATTTTTGCTTGAATGAACTACCTGCTGATAGAGTTCCTTGTAGTTTGTGTTCAATACCATTTTATTGCTCCAACCAATGTCAAATACGGGCAGGCGGGCAAATGTTCAGGATTTATCCAGAAGAAAATGCCATTCTTAAAAATTTACCCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAAGGCAATGATTCTGAACTAGAAATTGATGATATTACAGAACATAACCATGAATGTCAAGGTGTACATTGGCCTGCAGTACTTCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCTAGGTTTTCACTGAAAAGCACGTCTGAAGATATTTCAAACTTTGTTGAAAGGCTGGAGCTTTCTCATTGTTACAATCATATGCCATCTGAAAGCAAATTGGATTCACATATATACGCAATGGTGTTATTATACTGTCTTCAACACTCTTATGGCACTATATTTTCCATAGATGGAATCTCTATGTCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCCCGTGGACGATCAGATCAGTTTGGAGAATTTCCATTTCAATCCAGTGCATATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTATTTCACGTACACTCTATTTACGAACCACAAAAGTTGTAGCAGCTGGGTGTCAGCTAGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGATGAATACATATTTCATTGTCAGTGTACTGGTTGTTCAGAAGTCAATCTGTCTGACATTGTCCTCAATGCTTTTCATTGTGTCAATACAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGACTGTGAAAAGCAGAAAATCAAACACTTCTCTATTGATGATAAAGTTGACAAGAATGATGACATTTATGAAGTTTGTCTTCATGCATTAAACGAAAATGACGCCTCCATTCATATTCAACCTGGATACTGTTTGAAATGTGGCTCTTACTGTGAGTTGGAGTCTTCACATGCTGCAGTTGATAAAGCTTTAATAACCATAAAAAGGTTGCAGGATGCAATACTGTCAAGAGAGATTTCAAATACTACTATTTCAGATGCTTTGAGATCTCTTCGTTTGCTGAGATCAAATTTGCATGCATACAACAAACTTATTGCAGAGGCAGAGGACAACCTTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAACCATCTATGGGCCATTGTAAAGCATCTATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATGGTGCTGCTGTGGACAGCATAAGTCGAATAGGTGATATCTTCTCGCGTTTTTATGGACTTCATGCAGACTTGGTCTTCCCATATCTTCAATATCTTAGGAGAGAGATTGAGAATTTTTCAGTGAAGGCTCTCCAATCAAATGCTTTTCCAGCAAAATGA 2379 0.3972 METLKAAIPEALKRVIGESTVDDLRSTCSSLHRFLVHFEPFQKMVAELADPKYALCGKSKDAALKSKQLGNQYFSNANYAKALYSYTQALRRAPLEAGNMENNLVAMLYINRATVLHKMSLLIECLRDCSRALQICPSYAKAWYRRGKVNASLGNYKDAIYDLNVAKSVESSIGGKRQIESELKIIFDQCKSTSTVVQHKENSLKTVGEMPRIKLQCVSMPDKGRGMVSSCDISPGSLVHAEEPYAMIISKQCRETHCHFCLNELPADRVPCSLCSIPFYCSNQCQIRAGGQMFRIYPEENAILKNLPSDLGEYAAEVIQGNDSELEIDDITEHNHECQGVHWPAVLPSEIVLAGRILARFSLKSTSEDISNFVERLELSHCYNHMPSESKLDSHIYAMVLLYCLQHSYGTIFSIDGISMSQVVIIISQIKVNCMTVVRLKSIDARGRSDQFGEFPFQSSAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFISRTLYLRTTKVVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYIFHCQCTGCSEVNLSDIVLNAFHCVNTNCSGAVLESRVLDCEKQKIKHFSIDDKVDKNDDIYEVCLHALNENDASIHIQPGYCLKCGSYCELESSHAAVDKALITIKRLQDAILSREISNTTISDALRSLRLLRSNLHAYNKLIAEAEDNLAQAFCLVGELQPSMGHCKASIQILEKLYDPDDIVIAYELVKLSSIQLSLDDGAAVDSISRIGDIFSRFYGLHADLVFPYLQYLRREIENFSVKALQSNAFPAK 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1544g00019 792 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Gabi1544g00019 792 SUPERFAMILY SET domain 202 549 IPR046341 -
Gabi1544g00019 792 Coils Coil 668 688 - -
Gabi1544g00019 792 Gene3D Tetratricopeptide repeat domain 527 787 IPR011990 GO:0005515
Gabi1544g00019 792 Pfam SET domain 224 519 IPR001214 GO:0005515
Gabi1544g00019 792 SMART tpr_5 106 139 IPR019734 GO:0005515
Gabi1544g00019 792 SMART tpr_5 63 96 IPR019734 GO:0005515
Gabi1544g00019 792 SMART tpr_5 140 173 IPR019734 GO:0005515
Gabi1544g00019 792 SMART tpr_5 683 716 IPR019734 GO:0005515
Gabi1544g00019 792 SUPERFAMILY TPR-like 60 166 IPR011990 GO:0005515
Gabi1544g00019 792 Gene3D Tetratricopeptide repeat domain 37 199 IPR011990 GO:0005515
Gabi1544g00019 792 Gene3D SET domain 226 256 IPR046341 -
Gabi1544g00019 792 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 778 - -
Gabi1544g00019 792 ProSiteProfiles SET domain profile. 211 519 IPR001214 GO:0005515
Gabi1544g00019 792 Gene3D - 257 289 - -
Gabi1544g00019 792 Gene3D SET domain 416 518 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1544g00019 Gabi-Chr1544 121545 137016 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1544g00019 SET 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1544g00019 K24634 - gmx:100783548 1285.78