Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1544g00018 ATGCAAATCACAGGCAATGAATGTTGTGCACGTTTGGCTTTCTTTGGCATTGCAACAAATCTTGTTACCTATCTTACAACCAAGCTACATGAAGGAAATGTCTCTGCTACAAGAAATGTCAGCATTTGGCAAGGCACTTGTTATCTTACTCCTCTCATTGGAGTTGTTCTAGCAGATGTCTCTATTATGTGGTCTGAAGTTTGTAAGGTTGGAGGGAGAGATTCAACAAGGCAAGACATGGGAGGCAAAAACTATGGAGCAGCAGGTCCTTCAGCGTATCTCTCATCCGATTTCATTAATGCAGTGTTCGTCATAACGGCTCCCAGCAAACAACAAAAGGTAGTGGAAATGGGGGATATGACAGAAGAAAATGGCCGTGATGAACCGAACAAGAACGTTGTCAGAGCATTGCCATTCTTCAAACTCTTGAGCTATGCTGACTTAGTAGACTGGACTCTTATGGGTTTGGGAACTATAGGTTCGATTGTGCATGGCATGGCCCTTCCTGTTGGCTATCTTTTGTTGGGAAAAGCTCTTAATGCTTTTGGGAACAATATTACAGACGCAGATGCCATGGTTCAAGCTCTTAAAAAGGTTGTTCCATATGTGTGGTACATGGCCATCGCCATATTTCCTGCTGGGATACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTACGCCTAAGATTAGCTTATATAAAAGCAATCCTCAGCCAAGAGGTAGGGGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATTCAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCAAGTTGTGCTACTTTCTTTGCTGGAATTGTGATTGCTACCATAAGCTGTTGGGAAGTGGCGCTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTATAATTGGGGCAACATACTCCAAGAAAATGAACACCATATCAACCACCAAAATGCTTTACCATTCTGAAGCTACATCTATGATAGAACAGACACTATCACATATAAAAACAGTATATGCTTTTGTTGGAGAGAGCTCTGCAATGAAAGACTTCACAGAGAACATGGACAAACAGTTTGTCATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAATAGGGATGTTTCAAACTGTGAGTCTCTGTTCTTGGGCTGTTATTGTATGGGTTGGAGCTGTTGTGGTCGTAGCTGGAAGTGCAAAGGGGGGAAACATAATAACTGCAGTGATGAGCATTCTCTTTGGTGCCATATCTCTCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAGGTTTTCCAAGTGATCCAAAGAAAGCCACTAATAAATAATGAATCAAAAGGGGATATGCCTGGGGAGATTAAAGGTTACATTGACCTAAGAGATGTTCACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGCGGGTGTGGAAAGAGCACTGTCATTTCCCTCGTTACCAGATTTTATGACCCCTCCAGAGGAGAAATTTTTATTGATAATCTCAATATCAAGGATCTTGATTTGAAGTTCCTTCGAAGCAATATAGGGACAGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAGGTGGGGAAAATGGACGCAGATGATCAAGAGATACAAAAGGCAGCGGTAATGTCAAATGCACACTCTTTCGTATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGTGTCCAATTATCAGGAGGTCAAAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTCTTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATTATTGCTGTATTAGAGAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGCTAGACACTAGCGCATTCTATAGTGCATTATTCAGCATGCAAAACCTTGAACCAGTTCCTGAATCCAGAACTACAATTTCCAAAAATAAAAGTGCCCGCCAACAAGATTTTCCTGATGAAACTAGACCACTACCAGAGAATCAGAGAGAGGTCCAAAGAAATCTCAATGAGCATTCTGTGCAAAAGGAACAGAACAAGAAAAGCACAACAAAAAGAAATACATTTTTCAGAATTTGTTTTGATTTAAAAAAGAGGGAGCTGGCGAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATCTCAAAACCAGTTTTTGGATTCTACATCATCACCATTGGAGTAGCATACTTTGAAGAAGATGCAAAAAGGAAAGTTGGGTTTTATTCAGCCATCTTCTCAGCAATAGGGTTGCTTTCATTATTCAGTCATACCGTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATCTCAGACGAGCTCTCTACTCAGGAGTGCTTCGTAATGAAGTAGGCTGGTTTGACAAATCTGAGAACAGTGTTGGTTCATTAACTTCACGCATTATCAGTGACACTGCCATGGTCAAAACCATTATTGCTGATCGAATGTCCATGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTAGTCAGTATGGTTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCCGCAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACAAGTACTTCAGAAAGCCAAAACATCTCTGGAAATTCCAAAGAAAATGTACAGGAAAGAAAGTATCAAATATGGAATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCTCATGCTATTGCTTTGTGGTACACAACAATTCTAGTTGAAAGACGTCAAGCCACCTTTGAAAATGGAATAAGATCATACCAAATTTTCTCTATCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCTCAGCTATCAATATACTAACCCCGGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCGGATACACCGGATGATTCCCAACCTGAGAGGATCCAAGGAAATATTGAATTTCAAAATGTAAAATTCAACTACCCTTCAAGACCGGAGGTCACTGTTCTTGACAAGTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGTGCTGGAAAATCTTCTGTTTTGGCTCTTTTACTAAGATTTTACGATCCAGGCATGGGAAAGGTGTTAATTGATGGGAAAGACATACGGAGATATAATCTAAGATGGTTGAGGGCACAAATAGGGCTGGTACAACAAGAACCACTGCTATTTAATTGTTCAATTAGAGACAACATTTGCTATGGCAATGATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAACCTTCCAAATGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAGCAGAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCCGCAATATTACTCCTCGATGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAGTTATTGTAAATGCTTTAAAAGCAATCAGTGCCTTGTGTTCAAGAACCACCCAGATTACAGTAGCTCATAGGCTTTCCACCGTAATAAACTCAGATACCATAATCGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCCTAATAACTGCAGAGGTAGGACTTTATTCAAGGTTATTCAGGTTACAGAGCTTTGAAGAGACATCATAG 4074 0.4151 MQITGNECCARLAFFGIATNLVTYLTTKLHEGNVSATRNVSIWQGTCYLTPLIGVVLADVSIMWSEVCKVGGRDSTRQDMGGKNYGAAGPSAYLSSDFINAVFVITAPSKQQKVVEMGDMTEENGRDEPNKNVVRALPFFKLLSYADLVDWTLMGLGTIGSIVHGMALPVGYLLLGKALNAFGNNITDADAMVQALKKVVPYVWYMAIAIFPAGILEIGCWMYASERQLLRLRLAYIKAILSQEVGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATISCWEVALLCLVVVPLILIIGATYSKKMNTISTTKMLYHSEATSMIEQTLSHIKTVYAFVGESSAMKDFTENMDKQFVISKGEALVKGVGIGMFQTVSLCSWAVIVWVGAVVVVAGSAKGGNIITAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLINNESKGDMPGEIKGYIDLRDVHFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVTRFYDPSRGEIFIDNLNIKDLDLKFLRSNIGTVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAVMSNAHSFVSQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADIIAVLENGQVVETGTHQSLLDTSAFYSALFSMQNLEPVPESRTTISKNKSARQQDFPDETRPLPENQREVQRNLNEHSVQKEQNKKSTTKRNTFFRICFDLKKRELAKIAIGSFAAAFSGISKPVFGFYIITIGVAYFEEDAKRKVGFYSAIFSAIGLLSLFSHTVQHYFFGVVGEKAMSNLRRALYSGVLRNEVGWFDKSENSVGSLTSRIISDTAMVKTIIADRMSMIVQCVSSILIATVVSMVVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESATNIRTIASFCHEEQVLQKAKTSLEIPKKMYRKESIKYGIIQGFSLCLWNIAHAIALWYTTILVERRQATFENGIRSYQIFSITVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNIEFQNVKFNYPSRPEVTVLDKFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPGMGKVLIDGKDIRRYNLRWLRAQIGLVQQEPLLFNCSIRDNICYGNDGASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERVIVNALKAISALCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLITAEVGLYSRLFRLQSFEETS 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1544g00018 1357 Gene3D - 1100 1356 IPR027417 -
Gabi1544g00018 1357 MobiDBLite consensus disorder prediction 733 747 - -
Gabi1544g00018 1357 Gene3D ABC transporter type 1, transmembrane domain 141 731 IPR036640 GO:0005524|GO:0016020
Gabi1544g00018 1357 CDD ABC_MTABC3_MDL1_MDL2 1110 1351 - -
Gabi1544g00018 1357 SUPERFAMILY ABC transporter transmembrane region 141 464 IPR036640 GO:0005524|GO:0016020
Gabi1544g00018 1357 Gene3D MFS general substrate transporter like domains 1 62 IPR036259 -
Gabi1544g00018 1357 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1110 1349 IPR003439 GO:0005524
Gabi1544g00018 1357 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 156 443 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00018 1357 FunFam ABC transporter B family member 4 467 722 - -
Gabi1544g00018 1357 SUPERFAMILY ABC transporter transmembrane region 779 1096 IPR036640 GO:0005524|GO:0016020
Gabi1544g00018 1357 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 791 1075 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00018 1357 MobiDBLite consensus disorder prediction 720 747 - -
Gabi1544g00018 1357 Pfam ABC transporter 495 644 IPR003439 GO:0005524
Gabi1544g00018 1357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1102 1351 IPR027417 -
Gabi1544g00018 1357 ProSitePatterns ABC transporters family signature. 616 630 IPR017871 GO:0005524|GO:0016887
Gabi1544g00018 1357 SMART AAA_5 504 696 IPR003593 GO:0016887
Gabi1544g00018 1357 SMART AAA_5 1137 1326 IPR003593 GO:0016887
Gabi1544g00018 1357 FunFam ABC transporter B family member 1 1100 1352 - -
Gabi1544g00018 1357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 714 IPR027417 -
Gabi1544g00018 1357 Gene3D ABC transporter type 1, transmembrane domain 754 1098 IPR036640 GO:0005524|GO:0016020
Gabi1544g00018 1357 CDD ABC_MTABC3_MDL1_MDL2 477 714 - -
Gabi1544g00018 1357 PANTHER ABC TRANSPORTER B FAMILY 118 713 IPR039421 -
Gabi1544g00018 1357 Pfam ABC transporter transmembrane region 155 428 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00018 1357 Pfam ABC transporter transmembrane region 792 1054 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00018 1357 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 713 IPR003439 GO:0005524
Gabi1544g00018 1357 CDD ABC_6TM_Pgp_ABCB1_D2_like 784 1093 - -
Gabi1544g00018 1357 Gene3D - 467 715 IPR027417 -
Gabi1544g00018 1357 CDD ABC_6TM_Pgp_ABCB1_D1_like 154 451 - -
Gabi1544g00018 1357 ProSitePatterns ABC transporters family signature. 1249 1263 IPR017871 GO:0005524|GO:0016887
Gabi1544g00018 1357 Pfam ABC transporter 1128 1277 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1544g00018 Gabi-Chr1544 105262 118624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1544g00018 127 1356 Calmodulin-binding Proteins AT2G36910 41.204 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1544g00018 K05658 - qsa:O6P43_014878 1878.99