Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1544g00017 ATGGCTCCCAGCAAACAACAAAAGGTAGTGGAAATGGGGGATATGACAGAAGAAAATGGTCGTGATGAACCGAACAAGAACGTTGTCAGAGCATTGCCATTCTTCAAACTCTTGAGCTATGCTGACTTAGTAGACTGGATTCTTATGGGTTTGGGAACTATAGGTTCGATTGTGCATGGCATGGCCCTTCCTGTTGGCTATCTTTTGTTGGGAAAAGCTCTTAATGCTTTTGGGAACAATATTACAGACCCAGATGCCATGGTTCGTGCTCTTAAAAAGGTTGTTCCATATGTGTGGTACATGGCCATCGCCACATTTCCTGCTGGGATACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTACGCCTAAGATTAGCTTATCTAAAAGCAGTCCTCAGCCAAGAGGTAGGGGCTTTTGATACAGAGTTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATTCAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCAAGCTGTGCTACTTTCTTTGCTGGAATTGTGATTGCTACCATAAGCTGTTGGGAAGTGGCGCTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTCTAATTGGGGCAACTTACTCCAAGAAAATGAACACCATATCAACCACCAAAATGCTTTACCATTCAGAAGCTACATCTATGATAGAGCAGACAATATCACATATAAAAACAGTATATGCTTTTGTTGGAGAGAGCTCTGCAATCAAATCCTTCACAGAGAACATGGCCGAACAGTACGTTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTGTCATTGTATGGGTTGGAGCTGTTGTGGTCGTAGCCGGAAGAGCAAAGGGGGGAGACATAATAGCTGCAGTGTTGAGCATTCTCTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAGGTTTTCCAAGTGATCCAAAGAAAGCCACTAATAAATAATGAATCAAAAGGGGATATGCCTGGGGAGATTAAAGGTTACATTGACCTAAGAGATGTTCACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGCGGGTGTGGAAAGAGCACTGTCATTTCCCTCGTTACCAGATTTTATGACCCTTCCAGAGGAGAAATCTTTATTGATAATCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGAAGCAATATAGGGACAGTTTCCCAAGAACCATCTCTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGGAAAATGGAAGCAGATGATCAAGAGATACAAAAGGCAGCGGTAATGTCAAATGCACACTCTTTCGTATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGTGTCCAATTATCAGGAGGTCAAAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTCTTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAGTCCGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCCATGCAGGGAAGGACTGTCATCTTGATAGCACACAGGCTCTCAACAGTTGTAAATGCAGATATTATTGCTGTAGTAGAGAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGCTAGACACTAGCGCATTCTATAGTGCATTATTCAGCATGCAAAACCTTGAACCAGTTCCTGAATCCAGAACTACAATTTCCAAAAATAAAAGTGCCCGCCAACAAGATTTTCCTGATGAAACTAGACCACTACCAGAGAATCAGAGAGAGGTCCAAAGAAATCTCAATGAGCATTCTGTGCAAAAGGAACAGAACAAGAAAAGCACAACAAAAAGAAATACATTTTTCAGAATTTGGTTTGATTTAAAAAAGAGGGAGCTGGTGAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATCTCAAAACCAGTTTTTGGATTCTACATCATCACCATTGGAGTAGCATACTTTGAAGAAGATGCAAAAAGGAAAGTTGGGTTTTATTCAGCCATCTTCTCAGCAATAGGGTTGCTTTCATTATTCAGTCATACCGTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATCTCAAACGAGCTCTGTATTCAGGAGTGCTTCGTAACGAAGTAGGCTGGTTTGACGAATCTGAGAACACTGTTGGTTCATTAACTTCACGCATTATCAGTGACACTGCCATGGTCAAAATCATTATTGCTGATCGAATGTCCATGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTAGTCAGTCTGATTGTCAACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCCGCTACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAAGAAGTACTGAAGAAAGCCAAAACATCTCTGGAAATTCCGAAGAAAATGTACAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTGTGGAATATTGCACACGCCGTTGCTTTGTGGTACACAACAATTCTGGTTGAAAGACGTCAAGCCTCCTTTAAAAATGGAATAAGATCATACCAAATTTTCTCTCTCACAATTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCTCAGCTATCAATATACTAACCCCGGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCGGATATACCGGATGATTCCCAACCTGAGAGGATCCAAGGAAATATTGAGTTTCAAAATGTAAAATTCAACTACCCTTCAAGACCGGAGGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATTAAAGGTGGCTTTTGTAGGACCAAGTGGTGCTGGAAAATCCTCTGTTTTGGCTCTTTTACTAAGATTTTACGATCCAGGTATGGGAAAGGTGTTAATTGATGGGAAAGACATACGGAGATATAATCTAAGATGGTTGAGGGCACAAATAGGGCTGGTACAGCAAGAGCCACTGCTATTTAATTTCTCAATTAGAGACAACATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAACCTACCAGACGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAGCAGAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCCGCAATATTACTCCTCGATGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAGTTATTGTAAATGCTTTAAAAGCAATCAGTGCCTTGTGTTCAAGAACCACCCAGATTACAGTAGCTCATAGGCTTTCCACCGTAATAAACTCAGATACCATAATCGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCCTAATAACTGCAGAGGTAGGACTTTATTCAAGGTTATTCAGGTTACAGAGCTTTGAAGAGACCTCATAG 3759 0.419 MAPSKQQKVVEMGDMTEENGRDEPNKNVVRALPFFKLLSYADLVDWILMGLGTIGSIVHGMALPVGYLLLGKALNAFGNNITDPDAMVRALKKVVPYVWYMAIATFPAGILEIGCWMYASERQLLRLRLAYLKAVLSQEVGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATISCWEVALLCLVVVPLILLIGATYSKKMNTISTTKMLYHSEATSMIEQTISHIKTVYAFVGESSAIKSFTENMAEQYVISKGEALVKGVGTGMFQTVSFCSWAVIVWVGAVVVVAGRAKGGDIIAAVLSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLINNESKGDMPGEIKGYIDLRDVHFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVTRFYDPSRGEIFIDNHNIKDLDLKFLRSNIGTVSQEPSLFAGTIKDNLKVGKMEADDQEIQKAAVMSNAHSFVSQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADIIAVVENGQVVETGTHQSLLDTSAFYSALFSMQNLEPVPESRTTISKNKSARQQDFPDETRPLPENQREVQRNLNEHSVQKEQNKKSTTKRNTFFRIWFDLKKRELVKIAIGSFAAAFSGISKPVFGFYIITIGVAYFEEDAKRKVGFYSAIFSAIGLLSLFSHTVQHYFFGVVGEKAMSNLKRALYSGVLRNEVGWFDESENTVGSLTSRIISDTAMVKIIIADRMSMIVQCVSSILIATVVSLIVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESATNIRTIASFCHEEEVLKKAKTSLEIPKKMYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVERRQASFKNGIRSYQIFSLTIPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDIPDDSQPERIQGNIEFQNVKFNYPSRPEVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPGMGKVLIDGKDIRRYNLRWLRAQIGLVQQEPLLFNFSIRDNICYGNNGASESEIVEVAREANIHEFVSNLPDGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERVIVNALKAISALCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLITAEVGLYSRLFRLQSFEETS 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1544g00017 1252 FunFam ABC transporter B family member 4 362 617 - -
Gabi1544g00017 1252 CDD ABC_MTABC3_MDL1_MDL2 372 609 - -
Gabi1544g00017 1252 Gene3D - 995 1251 IPR027417 -
Gabi1544g00017 1252 Gene3D ABC transporter type 1, transmembrane domain 36 626 IPR036640 GO:0005524|GO:0016020
Gabi1544g00017 1252 MobiDBLite consensus disorder prediction 1 24 - -
Gabi1544g00017 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Gabi1544g00017 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Gabi1544g00017 1252 Pfam ABC transporter transmembrane region 687 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00017 1252 Pfam ABC transporter transmembrane region 50 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00017 1252 MobiDBLite consensus disorder prediction 615 642 - -
Gabi1544g00017 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00017 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 609 IPR027417 -
Gabi1544g00017 1252 FunFam ABC transporter B family member 1 995 1247 - -
Gabi1544g00017 1252 SUPERFAMILY ABC transporter transmembrane region 36 359 IPR036640 GO:0005524|GO:0016020
Gabi1544g00017 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1544g00017 1252 CDD ABC_MTABC3_MDL1_MDL2 1005 1246 - -
Gabi1544g00017 1252 MobiDBLite consensus disorder prediction 628 642 - -
Gabi1544g00017 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1244 IPR003439 GO:0005524
Gabi1544g00017 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Gabi1544g00017 1252 Gene3D - 362 610 IPR027417 -
Gabi1544g00017 1252 SMART AAA_5 399 591 IPR003593 GO:0016887
Gabi1544g00017 1252 SMART AAA_5 1032 1221 IPR003593 GO:0016887
Gabi1544g00017 1252 SUPERFAMILY ABC transporter transmembrane region 674 991 IPR036640 GO:0005524|GO:0016020
Gabi1544g00017 1252 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Gabi1544g00017 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 988 - -
Gabi1544g00017 1252 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524|GO:0016887
Gabi1544g00017 1252 Gene3D ABC transporter type 1, transmembrane domain 664 952 IPR036640 GO:0005524|GO:0016020
Gabi1544g00017 1252 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524
Gabi1544g00017 1252 Pfam ABC transporter 390 539 IPR003439 GO:0005524
Gabi1544g00017 1252 PANTHER ABC TRANSPORTER B FAMILY 13 608 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1544g00017 Gabi-Chr1544 81781 90173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1544g00017 22 1251 Calmodulin-binding Proteins AT2G36910 41.046 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1544g00017 K05658 - qsa:O6P43_014878 1888.23