Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1544g00001 ATGAAGACTATCCTTTCTTCTGAGACTATGAACATTCCCGATGGCGTGAGCATCAAGGTGCACGCCAAGGTCATCGAAGTTGAAGGCCCTCGTGGCAAGTTGGTCCGAGATTTTAAGCATTTGAATCTTGATTTCGAGCTCATCACCGACGATAACGGCCAGAAGAAGCTTAAGATCGAAGCCTGGTTCGGATCCCGTAAAACCTCCGCCTCCATACGCACTGCCCTCAGCCACGTCGGGAATCTCATCACCGGCGTCACCAAGGGATATCGCTACAAGATGAGGTTCGTCTACGCTCACTTCCCCATCAACGCTAGCATCACCAACAGCAACTCTTCCATCGAAATCCGAAATTTCCTCGGCGAAAAGAAGGTGAGGAAAGTGGACATGCTTGCAGGAGTTTCCGTTGTTCGATCTGAAAAGGTTAAGGATGAGTTGGTTTTGGATGGTAATGATATTGAATTAGTTTCTCGATCCTGTGCTCTCATTAACCAGGTGTATGCTATAGAGGGAAGCTTTCAGATCCTTTGGTTGTTTGTATACTGGATAGGGCGATTTATGTTTGTATTTTGGGTGTGCTGTTGGATTTCTTTCAAGCTTCGCTGCCTCTACGTAAGTGTGCTTGCGACTCTGTAG 636 0.4717 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFELITDDNGQKKLKIEAWFGSRKTSASIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASITNSNSSIEIRNFLGEKKVRKVDMLAGVSVVRSEKVKDELVLDGNDIELVSRSCALINQVYAIEGSFQILWLFVYWIGRFMFVFWVCCWISFKLRCLYVSVLATL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1544g00001 211 Pfam Ribosomal protein L6 101 170 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 SUPERFAMILY Ribosomal protein L6 90 170 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 FunFam - 90 164 - -
Gabi1544g00001 211 Gene3D - 90 172 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 166 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi1544g00001 211 FunFam 60S ribosomal protein L9 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1544g00001 Gabi-Chr1544 4738 7818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1544g00001 1 165 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.337 1.03e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1544g00001 K02940 - gmx:100306058 295.049