LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1541g00001	ATGGCTGCCACTTTCTGCTATTCATATATTCTTCCACTATTTTTGTCCTGTCTTTTCTTTAACCTCCCTGCTAATTCAATTTACTTCCAAATTCCTCAATTTAATCCAGGTGATGCTAACATACTCTACCAAGGATCTACAGCACCTCGTGACGGAGGTGTTGATTTCAGCTTCAATGACCAGTATACGTGTCAAGTTGGAAGGGCCATCTATGCCAATAGGGTGTTACTTTGGGACTCTAGCACAGGTCAACTCACTGACTTCAAAACTCATTACACTTTCATTATTGACACTCTAAATCAATCACGGTATGGCCATGGACTTGCCTTCTTCCTTGCTGCTGCTGGAACTGAAATCCCACCCAATTCTTCTGGTGGCTTTCTGGGCCTATTCAACACTACAACTAGAGTTTCATCCCCTAACCCAATTGTTCATGTAGAGTTCGATACTTACCCAAATCCTGATTGGGGTGAGACCAAGCAACATGTTGGGATCAACAATAATTCAATTTCTTCATCAGTTTTGACTCGTTGGAATGCTAGTCTACATAGTGGAGACATTGCTGAGGTCTGGATTAGCTACAGTTCTACAACCAAGAATTTAAGCGTAACTTGGAAATACCAAAGCACTTTTGATCCTCAAGAAATTACCAGTCTTTCATATCTAATTGATTTAAGGACGGTCCTGCCTGAATGGGTTGCAGTCGGATTTTCTGCTTCAACTGGTTCGATTGGAGAAAGCCATAATCTTCTGTCATGGGAATTCAACTCAACTTTATATAAAGGTGGAAATAATACAAAGAAGACAAGGTTAGTTGTGATTCTAACTGTCTCTTGGGGTGTTCTAGTTGTGGTAGCAATTGCAGCATGTCTGTTACTCTGGAGGAAGAAAAACAAAAACAAAAAAGAAGAGGCTATGAATTTAACCACGATCAATGATGACCTTGAAAGAGGAGCAGGACCAAGAAGGTTCTCACACAGAGAGCTTGCTTTGGTTACCAATAACTTCTCCAGGGACAGGAAATTGGGTCAAGGTGGGTTTGGAGCTGTTTACAAAGGTTACTTTGTTGATTTAGATTTAGCAGTTGCTGTGAAGAAAATATTAAAGGGTTCTAGACAGGGGAAGAAAGAGTATGTAACCGAAGTTAAAGTCATTAGCCAACTGAGACACAGGAATCTTGTGCAGCTCTTGGGTTGGTGCCACGACAGAGGTGAGTTTATGCTTGTTTATGAGTTCATGCCAAATGGAAGCCTTGATTCTCATTTATTTGGTAAAAAGGCACCCCTCCCTTGGAGTGTGAGGTACAAGATAGCTCTTGGATTGGCCTCTGCAGTGCTCTATCTACATGAAGAATGGGAACGATGTGTGGTGCATAGGGATATCAAATCAAGCAATGTTATGCTAGATTCAAGTTTCAATGTCAAGCTTGGAGATTTCGGGTTGGCTAAGCTCATGGAACATGAAATAGGGCCCCAAACAACAGTTTTGGCTGGAACATTGGGCTATTTGGCTCCAGAATATGTGAGTACAGGCAGGGCCAGCAAGGAATCAGATGTCTATAGTTTTGGGATGGTTGTCTTGGAGATTGCTACTGGTAAGAAAGTTGTTGATGTTATGAAGGACAAAGATGAAGAAAAGGGATTGATTGACTGGGTTTGGGGTCATTATGGCAGAGGGGAGCTGCTTGTGGCAATGGATGAGATTTTGAAGAAGGATTTTGATGAGAAACAAGGAGAGTGTTTGATGATTGTGGGATTGTGGTGTGCTCACCCAGACGCAAATATGAGACCATCAATACGACAAGCAATTCAATTGCTTAATTTTGAGGCTGCTATGCCGAACCTTCCACCAAAGAGGCCTGTTCCAACATATCATGCTCCTGCACCATCTGTAGTCTCAGGAGCAGCAGCTTCCACAACCACAATCCTTCACATTGGTCGTTGA	1944	0.4218	MAATFCYSYILPLFLSCLFFNLPANSIYFQIPQFNPGDANILYQGSTAPRDGGVDFSFNDQYTCQVGRAIYANRVLLWDSSTGQLTDFKTHYTFIIDTLNQSRYGHGLAFFLAAAGTEIPPNSSGGFLGLFNTTTRVSSPNPIVHVEFDTYPNPDWGETKQHVGINNNSISSSVLTRWNASLHSGDIAEVWISYSSTTKNLSVTWKYQSTFDPQEITSLSYLIDLRTVLPEWVAVGFSASTGSIGESHNLLSWEFNSTLYKGGNNTKKTRLVVILTVSWGVLVVVAIAACLLLWRKKNKNKKEEAMNLTTINDDLERGAGPRRFSHRELALVTNNFSRDRKLGQGGFGAVYKGYFVDLDLAVAVKKILKGSRQGKKEYVTEVKVISQLRHRNLVQLLGWCHDRGEFMLVYEFMPNGSLDSHLFGKKAPLPWSVRYKIALGLASAVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMEHEIGPQTTVLAGTLGYLAPEYVSTGRASKESDVYSFGMVVLEIATGKKVVDVMKDKDEEKGLIDWVWGHYGRGELLVAMDEILKKDFDEKQGECLMIVGLWCAHPDANMRPSIRQAIQLLNFEAAMPNLPPKRPVPTYHAPAPSVVSGAAASTTTILHIGR	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1541g00001	647	CDD	lectin_legume_LecRK_Arcelin_ConA	27	259	IPR001220	GO:0030246
	Gabi1541g00001	647	Pfam	Legume lectin domain	28	264	IPR001220	GO:0030246
	Gabi1541g00001	647	Gene3D	Transferase(Phosphotransferase) domain 1	413	627	-	-
	Gabi1541g00001	647	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	266	IPR013320	-
	Gabi1541g00001	647	FunFam	L-type lectin-domain containing receptor kinase IX.1	25	268	-	-
	Gabi1541g00001	647	CDD	STKc_IRAK	342	607	-	-
	Gabi1541g00001	647	PANTHER	-	59	610	-	-
	Gabi1541g00001	647	SUPERFAMILY	Protein kinase-like (PK-like)	320	627	IPR011009	-
	Gabi1541g00001	647	Gene3D	Phosphorylase Kinase; domain 1	321	412	-	-
	Gabi1541g00001	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Gabi1541g00001	647	ProSitePatterns	Legume lectins alpha-chain signature.	229	238	IPR000985	-
	Gabi1541g00001	647	SMART	serkin_6	336	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1541g00001	647	ProSitePatterns	Protein kinases ATP-binding region signature.	342	366	IPR017441	GO:0005524
	Gabi1541g00001	647	FunFam	L-type lectin-domain containing receptor kinase IX.1	321	412	-	-
	Gabi1541g00001	647	ProSiteProfiles	Protein kinase domain profile.	336	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1541g00001	647	Pfam	Protein kinase domain	337	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1541g00001	647	FunFam	Lectin-domain containing receptor kinase A4.3	413	626	-	-
	Gabi1541g00001	647	Gene3D	-	24	280	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1541g00001	Gabi-Chr1541	26195	28150	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1541g00001	3	625	Receptor kinase-like Gene Family	AT5G10530	57.346	0.0	729

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi1541g00001		Pkinase	3.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1541g00001	-		-	qsa:O6P43_025188	848.966