Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1540g00004 ATGATGGGAATGTTACTGCATTTTCTTTTTGTATTGCTTGGGGTCCTTGCTATTGTGGTTCTGGTTCAAGCTCAGGATCAATCAGGATTCATTAGCATAGATTGCGGGCTACCTGAAGATTCAAGCTATACTTCGAAGAACACAGGCATAAATTACATTTCAGATGCTAAATTCATTGATAGTGGTGTAAGTAAGAGAGTATCACTAGCATTGCAGGGTACTCTTTATCGGCAGCTAGATTATGTGAGGAGCTTTCCCAGTGGGGTGAGAAACTGTTACAGAATAAATGTAACCAGTGGTACTAAATATTTAATCCGAGTCACTTTCTATTATGGAAACTATGATGGGAAGAATCAGGTCCCACAATTTAGTCTTCATCTAGGAGCTAATTTTTGGAACACAGTGACATTCCCCAATGCATCACTCTACTATAGCAGGGAGATCATTTACTCTCCGCCACTAGATTATATTCATGTGTGTCTGGCTAACACAGGCAATGGGACACCATTCATTTCAGCTATAGAATTGAGGACTTTGAAAAATGATACTTATGACACTAACTCATCTGCATCATTGGAACGCTTCCTAAGATTGAATTTAGGTTCCATCACCAACTTGGAATCCAGGTACAAAGATGATGTTTATGACCGCATCTGGTCACCTTTTACACTCTCAGAGTCTACACCATTAAGCACCGCTCTGAGCCCTGATGAACTATCTCTGAATGAGTATAAACCACCAGCAGTTGTCATGAGCACTGCCATTACTCCAGATAATGCCAGTGCTCCTCTTAACTTCTCTTGGGATCCGAATAATGTAAATGACCAATACTACATCTACATGCACTTTAATGAGGTTGAAAAGCTGGCAGCAAATGAAACTAGAGCATTCAATATCACCATGAATGGCAAGCTTTTTTATGGACCTATGGTACCTGCATACCGGAGCACAAATACCATATTTAGTAGGTCAGCTTTGACTAGAGCCACAAGGTATCAATTTTCTCTTTTTCAGACAGAGACTTCTACTCTTCCACCCATCATCAATGCCCTTGAGATTTATACAGTAAAAGATTTCTCACAATCAGAAACTGAACAAGATGATGTTGATGCTATCACAAACATCAAGAACTCTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGCTCTCCTGTAGGGTACCTGTGGGAAGGTCTAAACTGTAGTTTTGATGGAGATAACCCCCCAAGAATCACATCCTTGAATTTGTCTTCAAGTGGACTGACCGGGCAGATAGCATCTTCCATTTCCAAGCTCACCATGTTACAGTACTTGAATTTATCAAACAATAGCTTAAGCGGGCCAGTGCCTGATTTTCTGACACAACTGCAGTCACTAAAAGTCTTAAACTTGGAGAATAACAACCTTACAGGTTTTGTTCCCAGTGAACTCCTTGACAGATCAAATAAAGGTTCACTGTCATTGAGCGTGGGGAAAAATCCAAATCTATGTGACTCAGCTTCATGCAATCCACAGACAGACAAAAATAGCATAGTTATTCCTGTAGTAGCAGCAGTAGCTGGGATTTTGGTGCTTCTTGTAATTGCAGCAGCAGCTGTCATTTGTAGCCTTAAAAAGAGAAAACCACGAGAGCCTAATACTCCAAATGGAACACAATTGGAATCCAAGCAAAGACAATATACATTCAATGATCTTGTTAAGTTCACCAACAACTTTGAAAGAGTTCTTGGTAGAGGTGGATTTGGAACAGTTTATCATGGCTTTATTGATGACACTGAAGTAGCTGTCAAGATCCTTTCCCCATCAGCAGTACGAGGATATCAACAATTTGTATCCGAGGTTAAACTTCTGATGAGAGTTCATCATAGAAATCTGACTTCCCTTATTGGGTATTGCAATGAAGAAACCAATATAGGGCTCATCTACGAATATATGCCAAATGGAGACCTGTATGAACTTCTTTCAGGAAAAAATAGCATGCCAAAGTTCTTGACATGGGAAGACAGACTCAGAATAGCAGTGGATGCAGCCCAAGGACTGGAATATTTACATAACGGTTGCACACCACCTATAATCCACAGAGATGTGAAAAGTACAAACATTTTATTAAATGAAAATTTCCAAGCAAAATTGGCTGATTTTGGACTATCCAAAAGCTTTCCCACTGATGGGGGCACACATTTGTCCACTGTTGTTGCTGGAACTCCTGGTTATCTGGATCCTGAGTATGGCATATCAAACAGGTTGACAGAAAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTGTTGGAGATAATCACAAGTGAACCAGCTATAATAAATATGAATGAGAATGAGAAGACTCACATAAGTCTGTGGGTTAGCTCCATGGTTTCTAAAGGAGATATAAAACATATTGTTGACTCAAGATTACAAGAAGATTTTGACACTAGCTCTGCCTGGAAAGCGGTTGAAACAGGAATTGCTTGTGTGTCCACTAATCCTGCTAAAAGGCCAAACATGAGTGATGTAGTGACCGAGCTAAAGGAGTGTTTGGCCACAGAATCAGCTCGAAAAAATACTGGTCGTGACACTGAAAACAAAGATTCAATTGAGTTGGTCACTGTGACTTCTGAACTTGTTCCCCTAGCTAGGTAG 2640 0.4019 MMGMLLHFLFVLLGVLAIVVLVQAQDQSGFISIDCGLPEDSSYTSKNTGINYISDAKFIDSGVSKRVSLALQGTLYRQLDYVRSFPSGVRNCYRINVTSGTKYLIRVTFYYGNYDGKNQVPQFSLHLGANFWNTVTFPNASLYYSREIIYSPPLDYIHVCLANTGNGTPFISAIELRTLKNDTYDTNSSASLERFLRLNLGSITNLESRYKDDVYDRIWSPFTLSESTPLSTALSPDELSLNEYKPPAVVMSTAITPDNASAPLNFSWDPNNVNDQYYIYMHFNEVEKLAANETRAFNITMNGKLFYGPMVPAYRSTNTIFSRSALTRATRYQFSLFQTETSTLPPIINALEIYTVKDFSQSETEQDDVDAITNIKNSYGVARNWQGDPCSPVGYLWEGLNCSFDGDNPPRITSLNLSSSGLTGQIASSISKLTMLQYLNLSNNSLSGPVPDFLTQLQSLKVLNLENNNLTGFVPSELLDRSNKGSLSLSVGKNPNLCDSASCNPQTDKNSIVIPVVAAVAGILVLLVIAAAAVICSLKKRKPREPNTPNGTQLESKQRQYTFNDLVKFTNNFERVLGRGGFGTVYHGFIDDTEVAVKILSPSAVRGYQQFVSEVKLLMRVHHRNLTSLIGYCNEETNIGLIYEYMPNGDLYELLSGKNSMPKFLTWEDRLRIAVDAAQGLEYLHNGCTPPIIHRDVKSTNILLNENFQAKLADFGLSKSFPTDGGTHLSTVVAGTPGYLDPEYGISNRLTEKSDVYSFGVVLLEIITSEPAIINMNENEKTHISLWVSSMVSKGDIKHIVDSRLQEDFDTSSAWKAVETGIACVSTNPAKRPNMSDVVTELKECLATESARKNTGRDTENKDSIELVTVTSELVPLAR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1540g00004 879 Gene3D Ribonuclease Inhibitor 369 491 IPR032675 -
Gabi1540g00004 879 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 646 855 - -
Gabi1540g00004 879 FunFam Leucine-rich repeat receptor-like kinase 367 500 - -
Gabi1540g00004 879 CDD STKc_IRAK 577 844 - -
Gabi1540g00004 879 SMART serkin_6 571 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1540g00004 879 FunFam Leucine-rich repeat receptor-like protein kinase 550 645 - -
Gabi1540g00004 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Gabi1540g00004 879 ProSiteProfiles Leucine-rich repeat profile. 459 480 IPR001611 GO:0005515
Gabi1540g00004 879 Pfam Malectin-like domain 33 356 IPR024788 -
Gabi1540g00004 879 Gene3D Transferase(Phosphotransferase) domain 1 646 870 - -
Gabi1540g00004 879 SUPERFAMILY Protein kinase-like (PK-like) 550 842 IPR011009 -
Gabi1540g00004 879 ProSitePatterns Protein kinases ATP-binding region signature. 577 598 IPR017441 GO:0005524
Gabi1540g00004 879 PANTHER OS07G0107800 PROTEIN-RELATED 31 849 - -
Gabi1540g00004 879 Gene3D Phosphorylase Kinase; domain 1 558 645 - -
Gabi1540g00004 879 Pfam Leucine rich repeat 410 470 IPR001611 GO:0005515
Gabi1540g00004 879 Pfam Protein tyrosine and serine/threonine kinase 573 842 IPR001245 GO:0004672|GO:0006468
Gabi1540g00004 879 ProSiteProfiles Protein kinase domain profile. 571 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1540g00004 879 SUPERFAMILY L domain-like 391 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1540g00004 Gabi-Chr1540 64778 69490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1540g00004 8 879 Receptor kinase-like Gene Family AT1G51800 48.775 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi1540g00004 Malectin_like 1.9e-113 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1540g00004 - - gmx:100779474 1201.42