LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1540g00003	ATGATGGGAATGTTACTGCATTTTCTTTTTGTATTGCTTGGGGTCCTTACTATTGTGGTTCTGGTTCAAGCTCAGGATCAATCAGGATTCATTAGCATAGATTGCGGGCTACCTGAAAATTCAAGCTATACTGAGAAGAACACAGGCATATATTACATTTCAGATGCTAAATTCATTGATAGTGGTGTAAGTAAGAGTATATCACCAGCATTGCAAGGTACTCATCAACAGCAGCTAGCTTATGTGAGGAGCTTTCCTAGTGGGGTGAGAAACTGTTACAGAATAAATGTAACCAGTGGTACTAAATATTTAATCCGAGGTAGTTTCTATTATGGAAACTATGATGATCTGAATCAGGTCCCAGAATTTAGTCTTCATCTAGGAGCTAATTTATGGGACACAGTGACATTTCCCAATGCATCACTCTCCTCAATCAGGGAGATCATTTACTCTCCACCACTAGATTATATTCATGTGTGTCTGGTTAACACAGGCAATGGGACACCATTCATTTCTGCTATAGAATTGAGGACTTTGAAAAATGATACTTATGACACTAACTCAGCTGCATCATTGGAACGCTTCCTAAGATTGAATTTAGGTTCCATCACCGACTTGGAATACAGGTACAAAGATGATGTTTATGATCGCATGTGGGCACCTTTTACATTCCAAAAGACTACACTATTAAGCACCTCACTGAGCCCTAAGGAACTATCTCAGAATGATTATGAAACACCAGCAGTTGTCATGAGCACTGCCATTACTCCAGATAATGCCAGTGCTCCTCTTAAGTTCTATTGGGATCCGAATAATGTAAATGACCAATACTACATCTACATGCACTTTAATGAGGTTGAAAAGCTGGCAGCAAATGAAACTAGAGCATTCAATATCACCATGAATGGCAAGTTTTTTTATGGACCTGTGGTACCTGCATACCAGACCACAAATACCATATATAGTATATCAGCTTTGGCTGGAGCCACTAGGTATGAATTTTCTCTTTTTCAGACAGAGACTTCTACTCTTCCACCCATCATCAATGCCCTTGAGATTTATATAGTAAAAGATTTCTCACAATCAGAAACTGAACAAGATGATGTTGATGCTATAACAAACATCAAGAATACTTATGGGGTGGCCAGTAATTGGCAAGGAGATCCATGCACTCCAGTAGGATACATGTGGGAAGGTCTAAACTGTAGTTTTGATGGCAATAACCCCCCAAGAATCACATCCTTGAATTTGTCTTCAAATGGACTGACCGGGCAGATAGCATCTTCTATTTCCAAGCTCACTGTGTTACAGTACTTGGATTTATCAAACAATAGCTTAAGCGGGCCAGTGCCTGATTTTCTGACACAACTGCAGTCACTAAAAGTCTTAAACTTGGAGAATAACAACCTTACAGGTTTTGTTCCAACTGGACTCCTTGACAGATCAAATAAAGGTTCACTATCATTGAGCGTGGGGCAAAATCCAAATCTATGTGACTCTGCTTCATGCAATCAACAAACAGATGATAAAAAGAAGAAGAAGAAAAATAATATAGTTATTCCTGTAGTAGCATCAGTTGCTGGGATTTTGGTGCTTATAGTAATTGCAGCAGCAGCTATCATTTGTGGCCTTAAAAAGAGAAAACCACGAGGTAAATCCACCAAATTAGCTGCTGTGAATATTCATGTTGAGCCCAATACTCCAAATGGGTCACAATTGGAATCCAAGAAAAGACAATATACATTCAATGATCTTGTTAAGATCACCAACAACTTTGAAAGAGTTCTTGGAAGAGGTGGATTTGGAACAGTTTATCATGGCTTTATTGATGACACTGAAGTAGCTGTCAAGATCCTTTCCCCATCAGCAGTACGAGGATATCAACAATTTGTATCCGAGGTTAAACTTCTAATGAGAGTTCATCACAGAAACCTGACTTCTCTTATTGGATATTGCAATGAAGAAACCAATATAGGGCTCATCTATGAATATATGCCAAATGGAAACTTGTATGAACTTCTTTCAGGAAAAAATAGCAGGCCAAAGTTCTTGACATGGGAGGACAGACTCAGAATAGCAGTGGATTCAGCCCAAGGACTGGAATATTTACATAACGGTTGCACACCACCTATAATCCACAGAGATGTGAAAAGTACAAACATTTTATTAAATGAAAATTTCCATGCAAAATTGGCTGATTTTGGACTATCCAAAAGCTTTCCCACTGATGGGGGCACACATATGTCCACTGTTGTTGCTGGAACTCCTGGTTATCTGGATCCTGAGTATGGCATATCAAACAGGTTGACAGAAAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTATTGGAGATAATCACAAGTGAACCAGCTATAATAAAAATGAATGAGAATGAGAAGACTCACATAAGTCTGTGGGTTAGCTCCATGGTTTCTAAAGGAGATATAAAACATATTGTTGACTCAAGATTACAAGAAGATTTTGACACTAGCTCTGCCTGGAAAGCTGTTGAAATAGGAATAGCTTGTGTGTCCACTAATCCTGCTAAAAGGCCAAACATGAGTGATGTAGTGACCGAGCTAAAGGACTGTTTGGCCACAGAATTAGGTCGAAGAAATACTGGTCGTGACACTGAAAACAAAGATTCAATTGATTTGGTCACTATGACTACTGAACTTGGTCCCCTAGCTAGGTAG	2697	0.3897	MMGMLLHFLFVLLGVLTIVVLVQAQDQSGFISIDCGLPENSSYTEKNTGIYYISDAKFIDSGVSKSISPALQGTHQQQLAYVRSFPSGVRNCYRINVTSGTKYLIRGSFYYGNYDDLNQVPEFSLHLGANLWDTVTFPNASLSSIREIIYSPPLDYIHVCLVNTGNGTPFISAIELRTLKNDTYDTNSAASLERFLRLNLGSITDLEYRYKDDVYDRMWAPFTFQKTTLLSTSLSPKELSQNDYETPAVVMSTAITPDNASAPLKFYWDPNNVNDQYYIYMHFNEVEKLAANETRAFNITMNGKFFYGPVVPAYQTTNTIYSISALAGATRYEFSLFQTETSTLPPIINALEIYIVKDFSQSETEQDDVDAITNIKNTYGVASNWQGDPCTPVGYMWEGLNCSFDGNNPPRITSLNLSSNGLTGQIASSISKLTVLQYLDLSNNSLSGPVPDFLTQLQSLKVLNLENNNLTGFVPTGLLDRSNKGSLSLSVGQNPNLCDSASCNQQTDDKKKKKKNNIVIPVVASVAGILVLIVIAAAAIICGLKKRKPRGKSTKLAAVNIHVEPNTPNGSQLESKKRQYTFNDLVKITNNFERVLGRGGFGTVYHGFIDDTEVAVKILSPSAVRGYQQFVSEVKLLMRVHHRNLTSLIGYCNEETNIGLIYEYMPNGNLYELLSGKNSRPKFLTWEDRLRIAVDSAQGLEYLHNGCTPPIIHRDVKSTNILLNENFHAKLADFGLSKSFPTDGGTHMSTVVAGTPGYLDPEYGISNRLTEKSDVYSFGVVLLEIITSEPAIIKMNENEKTHISLWVSSMVSKGDIKHIVDSRLQEDFDTSSAWKAVEIGIACVSTNPAKRPNMSDVVTELKDCLATELGRRNTGRDTENKDSIDLVTMTTELGPLAR	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1540g00003	898	SUPERFAMILY	Protein kinase-like (PK-like)	572	861	IPR011009	-
	Gabi1540g00003	898	FunFam	Leucine-rich repeat receptor-like kinase	367	500	-	-
	Gabi1540g00003	898	Gene3D	Transferase(Phosphotransferase) domain 1	665	886	-	-
	Gabi1540g00003	898	SUPERFAMILY	L domain-like	373	482	-	-
	Gabi1540g00003	898	Pfam	Protein tyrosine and serine/threonine kinase	592	861	IPR001245	GO:0004672\|GO:0006468
	Gabi1540g00003	898	Gene3D	Phosphorylase Kinase; domain 1	577	664	-	-
	Gabi1540g00003	898	CDD	STKc_IRAK	596	862	-	-
	Gabi1540g00003	898	FunFam	Leucine-rich repeat receptor-like protein kinase	569	664	-	-
	Gabi1540g00003	898	ProSiteProfiles	Protein kinase domain profile.	590	865	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1540g00003	898	Pfam	Malectin-like domain	33	355	IPR024788	-
	Gabi1540g00003	898	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	711	723	IPR008271	GO:0004672\|GO:0006468
	Gabi1540g00003	898	PRINTS	Leucine-rich repeat signature	457	470	-	-
	Gabi1540g00003	898	PRINTS	Leucine-rich repeat signature	436	449	-	-
	Gabi1540g00003	898	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	665	874	-	-
	Gabi1540g00003	898	ProSitePatterns	Protein kinases ATP-binding region signature.	596	617	IPR017441	GO:0005524
	Gabi1540g00003	898	Gene3D	Ribonuclease Inhibitor	369	491	IPR032675	-
	Gabi1540g00003	898	PANTHER	OS07G0107800 PROTEIN-RELATED	31	865	-	-
	Gabi1540g00003	898	Pfam	Leucine rich repeat	410	470	IPR001611	GO:0005515
	Gabi1540g00003	898	SMART	serkin_6	590	865	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1540g00003	Gabi-Chr1540	46146	50364	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1540g00003	8	898	Receptor kinase-like Gene Family	AT1G51800	49.224	0.0	853

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Gabi1540g00003		Malectin_like	9.9e-113	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1540g00003	-		-	gmx:100779474	1291.56