Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1539g00012 ATGAAAAAATCAACTAGATGTGCTGGCTGCAAATATTTGAGGAGAAGATGTCCACCAGATTGTGTTCTAAAGCCATATTTTCCCTCAACCAATCCTCAGAGATTCTCATTTGCTCATAAAGTCTATGGTGCCAGCAATATTACCAGAATTCTAACAAGACTTCAGGAGCATTTACGAGCTAAGGCTGCGGATAGCATGTGTTATGAAGCGAATATACGTGTTAAGGATAGGTGTGTTGGAGAAATCAATCGATTGCAACAACAGATAATTCAAGGTCAAAATGAGATAAAAAGGATCAAGGATGAAATGGCAGTTCAAAATGCACTGAGACAACAACAGCTGCAGCTGCAGTATCAGCAGCAAATGGTTCATGCTAATGATAAAGATGACGCGTTTTCATATGCAAGTTCAATTGAGCAGAAACCCAACCTCAGCATATCTCAACAGCCTTTTGATGCGTCCACCTTTGCTTGGTTTCCATGA 483 0.4017 MKKSTRCAGCKYLRRRCPPDCVLKPYFPSTNPQRFSFAHKVYGASNITRILTRLQEHLRAKAADSMCYEANIRVKDRCVGEINRLQQQIIQGQNEIKRIKDEMAVQNALRQQQLQLQYQQQMVHANDKDDAFSYASSIEQKPNLSISQQPFDASTFAWFP 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1539g00012 160 Coils Coil 82 102 - -
Gabi1539g00012 160 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Gabi1539g00012 160 Pfam Lateral organ boundaries (LOB) domain 6 99 IPR004883 -
Gabi1539g00012 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1539g00012 Gabi-Chr1539 198381 198985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1539g00012 6 113 AS2 family AT3G26660 50.000 1.06e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1539g00012 LOB 9.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1539g00012 - - qsu:112004481 150.984