Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1539g00011 ATGAAAAAATCAACTAGATGTGCTGGCTGCAAATATTTGAGGAGAAGATGTCCACCAGATTGTGTTCTAAAGCCATATTTTCCCTCAACCAATCCTCAGAGATTCTCATTTGCTCATAAAGTCTATGGTGCCAGCAATATTACCAGAATTCTAACGAGACTTCAGGAGCATTTACGAGCTAAGGCTGCGGATAACATGTGTTATGAAGCGAATATACGTGTTAAGGATCCTGTTTATGGGTGTGTTGGAGAAATCAATCGATTGCAACAACAGATAATTCAAGGTCAAAATGAGATAAAAAGGATCAAGGATGAAATGGCAGTTCAAAATGCACTGAGACAACAACAGCTGCAGCTGCAGTATCAGCAGCAAATGGTTCATGCTAATGATAAAGATGACGCGTTTTCATATGCAAGTTCAATTGAGCAGAAACCCAACCTCAGCATATCTCAACAGCCTTTTGATGCGTCCACCTTTGCTTGGTTTCCATGA 492 0.4024 MKKSTRCAGCKYLRRRCPPDCVLKPYFPSTNPQRFSFAHKVYGASNITRILTRLQEHLRAKAADNMCYEANIRVKDPVYGCVGEINRLQQQIIQGQNEIKRIKDEMAVQNALRQQQLQLQYQQQMVHANDKDDAFSYASSIEQKPNLSISQQPFDASTFAWFP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1539g00011 163 Coils Coil 85 105 - -
Gabi1539g00011 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 135 - -
Gabi1539g00011 163 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Gabi1539g00011 163 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1539g00011 Gabi-Chr1539 197294 197907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1539g00011 6 116 AS2 family AT3G26660 52.679 2.65e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1539g00011 LOB 3.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1539g00011 - - qsu:112004481 162.925