Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1539g00009 ATGAAAAAATCAACTAGATGTGCTGGCTGCAAATATTTGAGGAGAAGATGTCCACCAGATTGTGTTCTAAAGCCATATTTTCCCTCAACCAATCCTCAGAGATTCTCATTTGCTCATAAAGTCTATGGTGCCAGCAATATTACCAGAATTCTAACGAGACTTCAGGAGCATTTACGAGCTAAGGCTGCGGATAGCATGTGTTATGAAGCGAATATACGTGTTAAGGATCCTGTTTATGGGTGTGTTGGAGAAATCAATCGATTGCAACAACAGATAATTCAAGGTCAAAATGAGATAAAAAGGATCAAGGATGAAATGGCAGTTCAAAATGCACTGAGACAACAACAGCTGCAGCTGCAGTATCAGCAGCAAATGGTTCATGCTAATGATAAAGATGACGCGTTTTCATATGCAAGTTCAATTGAGCAGAAACCCAATGTAACACCCTTAATGAGGCCATCAAAGGTGTAA 471 0.397 MKKSTRCAGCKYLRRRCPPDCVLKPYFPSTNPQRFSFAHKVYGASNITRILTRLQEHLRAKAADSMCYEANIRVKDPVYGCVGEINRLQQQIIQGQNEIKRIKDEMAVQNALRQQQLQLQYQQQMVHANDKDDAFSYASSIEQKPNVTPLMRPSKV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1539g00009 156 Coils Coil 85 105 - -
Gabi1539g00009 156 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Gabi1539g00009 156 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Gabi1539g00009 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1539g00009 Gabi-Chr1539 191111 191703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1539g00009 6 116 AS2 family AT3G26660 53.571 5.44e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1539g00009 LOB 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1539g00009 - - qsu:112004481 156.762