Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1539g00008 ATGAGAAGAGGAGGCAGAGCGCTTCTTAGCCTCTCTTATATTCTGCACTCCCCAGTGAAGAAGCATTACCCACTTGCAAAATCACCATCACCCACTTCTGGTTTTCAAGGGAGTACCAGTTTCTCAATCTCTTCCTCCTCCCACATAACCCCTTCTGTTCAACAAGAAGAAGAAAATACTTCATCATCATCATCCAAGTCCCAAAGGGATTCACTGATTTTGGAACAGTTCAGACAAAAGAAACTCAAAGGGTCTTCAAAAGACTCAAAGGGTAAACCCCAAGTTTCAACTTCACCATCATCAAGTTCCGATACTACTACTGAGAAGGTGGTCCAAAAGGGTTCTCAGAATGAGAATGAAGCTGATATGGTGGTTGCAAGTTTTAACGAGTTGGGTATGAGTGAGGAGCTTGTTGAGGTAATGGAGGGGATTGGTGATTTTGTTCCAAGTGAGATACAATGTGTGGTTATTCCATCTATTTTGGAAGGGAAGAGTGTGTTGTTGAGTTCACCATCTCAACCTGATAGAACCTTGGCCTACTTGTTGCCCCTTATTCAGCTGTTGAGACGGGATGGAGAGTTGCTTGGTTCGAATTCAAAGCATCCCCGGGCCATTGTGCTCTGTGCTACAGAGGAGAAAGCTGGACAGTGCTTTAATGCTGCAAAATATATCATCCATAATGCAGAATTGAAGTCTGCTAAGGATTGTGCTTCACCAGATAACGAGCACTCAAATGCCTCAATCGGCCTCATGATTGGAACTCCATGTGAGATTCTTCAATACATTGAAGAGGGTAGTGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGAGGCGGATTTCATGCTTGGTAATGGCCTTGGTCCTGAAATCAACGAAATTTTCAGACCATTACAAGATCAAGAATCAAAACCTACGATAAAAAAATTGCAAACTATTTTGGCAATATCAACAATAGCTGAAGTTTTGGGTGAACAATCCCCCTTTGTAAAGCATCTTGAGCGTGATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAGCAAACAGAAGTTTTTCATTTCATAGAGTCTCTGGATGCTCTAAGGAAAAAGGTGGCGGAAGCCATGGATTCCCTTTTGAAATAA 1134 0.4189 MRRGGRALLSLSYILHSPVKKHYPLAKSPSPTSGFQGSTSFSISSSSHITPSVQQEEENTSSSSSKSQRDSLILEQFRQKKLKGSSKDSKGKPQVSTSPSSSSDTTTEKVVQKGSQNENEADMVVASFNELGMSEELVEVMEGIGDFVPSEIQCVVIPSILEGKSVLLSSPSQPDRTLAYLLPLIQLLRRDGELLGSNSKHPRAIVLCATEEKAGQCFNAAKYIIHNAELKSAKDCASPDNEHSNASIGLMIGTPCEILQYIEEGSVVPAELRYLVLDEADFMLGNGLGPEINEIFRPLQDQESKPTIKKLQTILAISTIAEVLGEQSPFVKHLERDHAGNISAMSLEMEQTEVFHFIESLDALRKKVAEAMDSLLK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1539g00008 377 SUPERFAMILY PABC (PABP) domain 322 373 IPR036053 GO:0003723
Gabi1539g00008 377 Gene3D - 325 377 - -
Gabi1539g00008 377 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 288 377 IPR002004 GO:0003723
Gabi1539g00008 377 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 51 321 - -
Gabi1539g00008 377 MobiDBLite consensus disorder prediction 29 72 - -
Gabi1539g00008 377 Gene3D - 53 324 IPR027417 -
Gabi1539g00008 377 Pfam DEAD/DEAH box helicase 151 316 IPR011545 GO:0003676|GO:0005524
Gabi1539g00008 377 MobiDBLite consensus disorder prediction 73 88 - -
Gabi1539g00008 377 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 338 IPR014001 -
Gabi1539g00008 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 314 IPR027417 -
Gabi1539g00008 377 MobiDBLite consensus disorder prediction 89 118 - -
Gabi1539g00008 377 SMART poly_2 316 377 IPR002004 GO:0003723
Gabi1539g00008 377 Pfam Poly-adenylate binding protein, unique domain 329 373 IPR002004 GO:0003723
Gabi1539g00008 377 MobiDBLite consensus disorder prediction 22 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1539g00008 Gabi-Chr1539 164171 167195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1539g00008 125 299 Eukaryotic Initiation Factors Gene Family AT3G19760 24.581 4.26e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1539g00008 - - gmx:100800575 506.138