LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1539g00006	ATGGCGGGAGCTACAGGAAGAACCCTCTTCATCCTCTCATTCTCTTCTTCCTTAACACGCTTCTCTCTATCTCATTATCATGTCAAGCGCTTCCCTTTTCTCACACTCTCAAAACCCATCACGCTTTTGCCACGGTTTAGGCCTCTTTGTTCCATAACCGCCGCACCAGAAACCATGGACCCTGACCAGATGAAGCACTCCATGCTCCTCGAGAGGCTCAGAATCAGGCACCTTAAGGAAAGTGCCAAAACCCCAGAAGCCAATAACCCCTCAAAGAAGCGTGCTGCTTCTGCTGTTGAGGCTGAGAATGAAATGATGAAGAAGAATAAGGTTGTTGGGAGTTTTGAGGAATTAGGACTCAGTGATGAGGTTATGGGGGCTGTTAGAGAAATGTGTATTGAAGTTCCCACTGAGATTCAGTGTATTGGTGTCCCTGCTGTGTTGGAAGAGAAGAGTGTGGTTTTAGGGTCTCATACTGGTTCTGGCAAGACCCTTGCTTACTTGCTTCCTCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAGTGGAATACTGTTGAAGGCCAGGCGTCCCCGAGCTGTTGTGTTATGCCCTACAAGGGAGTTGTGTGAGCAGGTTTTCCGAGTTGCAAAATCGATAAGCCATCATGCACGATTCAAGTGTACCATGGTGAGTGGTGGTGGCCGTCTTAGACCTCAGGAGGATTCACTTAATAACCCCGTCGATGTGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATCGAGGAGGGAAATATGGTATATGGTGGCATCAAATACTTGGTTCTTGATGAGGCAGACACAATGTTTGATCGGGGATTTGGTCCTGATATACGCAAATTTCTGGGTCCATTAAAACATCGTGCTTCAAAATCTGATTGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATCGATGAGGAGTTTCAAGGCATTGTACATTTGCGCACATCTACGTTGCATAAAAAGATTTCTTCTGCGCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAACTGGAAGCATTACTTCAGGTTCTGGAGCCAAGCCTGGCAAAGGGGAACAGGGTGATGGTTTTCTGCAATACATTGAATTCGAGCCGTGCTGTGGATCACTATCTTGGTGAAAATCAGATTTCTACTGTTAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCAGAAAGTTTAAGAGTGACGGTGAAGATTGCCCTACATTGGTTTGCACAGACTTGGCAGCTAGGGGTCTGGACATGGATGTAGATCATGTTGTCATGTTTGACTTTCCCCTGAATTCTATTGACTACCTTCACCGCACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAAAAAGGACTTGATGTTGGCCACCAAAATTGAGGAAGCATTAAGGAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAAGGGACATTGCCAGGACCCAAATTACTGGGCCAGGGGGAAACAACAAAAAGTTTGTAAAAGTTTCACAAGTTAAGGACAAATCTGGTGGCCGCGCAAGTGCTAGAAATAGCGGGTCAGATAACAAATATGTTAAAGGATCACCATCAGCAAAAGTTAAAGACAAGTCTGGTGGCCGCACAAGTGCTAGAAATAGCGGGTCAGGTACCAAATATGTTAAAGGATCACCATCAGCAAAATCTATGAAGAAAGGGATTAACGTTTCAAAATCCATAAAATCTTCCAGTGCAAGTAGCTTGAGAAAAGATTCTTCAGAGAATAAGCAAACTGGTAAAAGGGGTGCCACCAAATCCACAAATTCTAAACTCAGTGTTGTGGGGTTTAGGGGGCGGAATTCATCATCAGACAAGAAGCAATCGTCTTTGTGA	1944	0.4465	MAGATGRTLFILSFSSSLTRFSLSHYHVKRFPFLTLSKPITLLPRFRPLCSITAAPETMDPDQMKHSMLLERLRIRHLKESAKTPEANNPSKKRAASAVEAENEMMKKNKVVGSFEELGLSDEVMGAVREMCIEVPTEIQCIGVPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLSGILLKARRPRAVVLCPTRELCEQVFRVAKSISHHARFKCTMVSGGGRLRPQEDSLNNPVDVVVGTPGRILQHIEEGNMVYGGIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRASKSDCLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHYLGENQISTVNYHGEVPAEQRVENLRKFKSDGEDCPTLVCTDLAARGLDMDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLMLATKIEEALRKNESLEAITKESVRRDIARTQITGPGGNNKKFVKVSQVKDKSGGRASARNSGSDNKYVKGSPSAKVKDKSGGRTSARNSGSGTKYVKGSPSAKSMKKGINVSKSIKSSSASSLRKDSSENKQTGKRGATKSTNSKLSVVGFRGRNSSSDKKQSSL	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1539g00006	647	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	113	141	IPR014014	GO:0003724
	Gabi1539g00006	647	MobiDBLite	consensus disorder prediction	616	647	-	-
	Gabi1539g00006	647	Gene3D	-	75	332	IPR027417	-
	Gabi1539g00006	647	MobiDBLite	consensus disorder prediction	529	647	-	-
	Gabi1539g00006	647	CDD	SF2_C_DEAD	344	476	-	-
	Gabi1539g00006	647	Pfam	DEAD/DEAH box helicase	137	320	IPR011545	GO:0003676\|GO:0005524
	Gabi1539g00006	647	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	144	331	IPR014001	-
	Gabi1539g00006	647	SMART	helicmild6	385	467	IPR001650	-
	Gabi1539g00006	647	MobiDBLite	consensus disorder prediction	565	580	-	-
	Gabi1539g00006	647	Pfam	Helicase conserved C-terminal domain	356	467	IPR001650	-
	Gabi1539g00006	647	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	356	509	IPR001650	-
	Gabi1539g00006	647	CDD	DEADc	124	323	-	-
	Gabi1539g00006	647	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	62	504	-	-
	Gabi1539g00006	647	MobiDBLite	consensus disorder prediction	587	609	-	-
	Gabi1539g00006	647	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	486	IPR027417	-
	Gabi1539g00006	647	SMART	ultradead3	132	351	IPR014001	-
	Gabi1539g00006	647	Gene3D	-	342	510	IPR027417	-
	Gabi1539g00006	647	MobiDBLite	consensus disorder prediction	535	550	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1539g00006	Gabi-Chr1539	142900	150950	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1539g00006	112	489	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.238	2.93e-40	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1539g00006	-		-	gmx:100805709	874.004