Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1538g00016 ATGAAAGGTGGAAAATCCAAGGCCGAATCTAAGAGAGCCGATGCCAAACTTTCTGTGAATAAGAAGGGTGGCGCAGCCACCAAACCGGCGAGGAAACCAGCGAAGGGAAAAGCCGCTAAAGACCCTAACAAGCCTAAGAGGCCTCCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGAACATCCTGACAACAAAGCAGTCTCTGCTGTTGGCAAAGCTGCTGGAGCGAAATGGAAGACTATGTCTGATGCTGATAAAGCACCTTATGCGGCAAAGTCGGAGAAACGAAAGGCAGAGTATGAGAAGAATATGAAAGCCTATAACAACAAACAAGCTGAAGGTCCTGCTGCGGATGAAGAAGAATCCGAGAAATCAATGTCAGAGGTGGATGAAGGAGATGATGATGGGAGTGACGAGGAGGAGGATGATGACTGA 453 0.4768 MKGGKSKAESKRADAKLSVNKKGGAATKPARKPAKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKTMSDADKAPYAAKSEKRKAEYEKNMKAYNNKQAEGPAADEEESEKSMSEVDEGDDDGSDEEEDDD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1538g00016 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Gabi1538g00016 150 CDD HMG-box_AtHMGB1-like 46 106 - -
Gabi1538g00016 150 Coils Coil 96 116 - -
Gabi1538g00016 150 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Gabi1538g00016 150 MobiDBLite consensus disorder prediction 1 51 - -
Gabi1538g00016 150 MobiDBLite consensus disorder prediction 129 150 - -
Gabi1538g00016 150 Gene3D High mobility group box domain 29 130 IPR036910 -
Gabi1538g00016 150 MobiDBLite consensus disorder prediction 94 112 - -
Gabi1538g00016 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Gabi1538g00016 150 MobiDBLite consensus disorder prediction 64 150 - -
Gabi1538g00016 150 SMART hmgende2 44 115 IPR009071 -
Gabi1538g00016 150 MobiDBLite consensus disorder prediction 1 18 - -
Gabi1538g00016 150 SUPERFAMILY HMG-box 33 126 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1538g00016 Gabi-Chr1538 173557 175096 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi1538g00016 HMG_box 1.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1538g00016 K25507 - gmx:100500173 199.519