Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1538g00015 ATGAGCCATTTTTGTTGCTTCTTTTCTGATGTGAAGAATGTGGGCATTGATGATAATTTGAGGTCCAAGAGTGGAGAAGGAACGAAAGCCACCAGTTTCAGTTTTCGCGAGCTTGCATCGGCAACAGGAGGTTTTAAGGAAGTGAACTTGATTGGAGAAGGAGGTTTTGGAAGGGTTTACAAGGGTCATCTCTCTACAGGCCAGGTTGTTGCTATAAAACAATTAAACCTAGATGGTCATCAAGGTTTTCGGGAATTTCTCACCGAGGTTCTTATGTTAAGCCTCTTACATCATCCTAATCTTGTTAAGTTAATTGGTTACTGCGCCGATGGACATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGTAGCCTCGAACGTCATCTTTTTGAGAAAGAACCACTAAGTTGGAGAATTCGACTGAAGATTGCTGTTGGCGCTGCTAAGGGTCTAAAGTATCTCCATTGTGAAGCAAATCCACCTGTTATCTATCGTGACTTGAAATCTTCCAACATTTTATTAGACAATGATTTTAACCCAAAACTCTCGGATTTTGGGCTTGCTAAACTTGGTCCTGTTGGAGACAATACCCATGTTTCCACCAGAGTGATGGGAACATATGGGTACTGTGCCCCAGAATATGCAATGAGTGGCAAATTAACTGTTAAATCTGATATCTATAGTTTTGGTGTGGTCTTGCTTGAGTTGATTACTGGACGTAAGGCACTAGATCTCACCAGAAAACCGGGGGAGCAAAACGTAGTTTCATGGGCTCGCCCATTTTTAAGTGACCGGAGAAAGTTTTCGCAAATGGTTGACCCTCTTCTGCAAGGAAACTACCCCTTACGCCGTTTGCACCATGCAATTGCTATTACTGCAATGTGTCTCCAGGAACAACCAAATTTTCGTCCGCATATTCGTGATATTGTTGTTGCACTGGAGTACCTGGCTTCTTAG 960 0.425 MSHFCCFFSDVKNVGIDDNLRSKSGEGTKATSFSFRELASATGGFKEVNLIGEGGFGRVYKGHLSTGQVVAIKQLNLDGHQGFREFLTEVLMLSLLHHPNLVKLIGYCADGHQRLLVYEYMPMGSLERHLFEKEPLSWRIRLKIAVGAAKGLKYLHCEANPPVIYRDLKSSNILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTVKSDIYSFGVVLLELITGRKALDLTRKPGEQNVVSWARPFLSDRRKFSQMVDPLLQGNYPLRRLHHAIAITAMCLQEQPNFRPHIRDIVVALEYLAS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1538g00015 319 Gene3D Phosphorylase Kinase; domain 1 11 120 - -
Gabi1538g00015 319 FunFam probable serine/threonine-protein kinase RLCKVII 17 120 - -
Gabi1538g00015 319 PANTHER OS07G0668900 PROTEIN 24 318 - -
Gabi1538g00015 319 FunFam Serine/threonine-protein kinase PBS1 121 319 - -
Gabi1538g00015 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Gabi1538g00015 319 PIRSF ILK 11 319 - -
Gabi1538g00015 319 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Gabi1538g00015 319 CDD STKc_IRAK 51 315 - -
Gabi1538g00015 319 Pfam Protein kinase domain 45 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1538g00015 319 ProSiteProfiles Protein kinase domain profile. 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1538g00015 319 Gene3D Transferase(Phosphotransferase) domain 1 121 319 - -
Gabi1538g00015 319 SMART serkin_6 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1538g00015 319 SUPERFAMILY Protein kinase-like (PK-like) 29 315 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1538g00015 Gabi-Chr1538 154015 156877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1538g00015 30 319 Glycoside Hydrolase AT3G07070 63.390 1.63e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1538g00015 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1538g00015 - - mnt:21407579 498.434