Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1538g00008 ATGACACACAAAACACTACCTCATCCTTCTTCCTTCACCTATGAATGGACTTATGATGTCTTCCTCAACTTCAGAGGTGTTGATACGCGCCACAATTTCACTACTGATCTCTACAGTTCTCTTACTGAAAGGGGTATCCACACCTTCTTTGATGAAAAAGGACTTAACGCAGGTGAAGAAATCACACCATCTCTTTTCCAAGCCATTCAAGATTCTAGGATTTTCATTGCTATTTTCTCTAAGAAATATGCATTCTCAACATTTTGTTTGCGTGAACTTGTCATGATCCTTGAGTGCTCAAAGGCACAAGGACGGTTATTTTGGCCTGTTTTTTATGATGTGGACCCATCACAAGTTCGGCACCAAAGTGGAACTTATGCAGAAGCTTTGGCTAAACATGAGGAGAGGTTCAAGGATGACAAGGATGAGGTGAAAAAATGGAGGGATGCTTTACATCGAGCTGCTAATATTTCTGGATCTCATTTCCAACACGGTTCTCAATCAGAATATCAGTTTATTAGAAAGATTGTTGAAGAAGTCTCTAAAAAGGTCAATCGCAGTCCGTTATATGTTGCTGATAAGCCGGTTGCATTAGAGCCTCGAGTGCTAGAAGTGACATCTCTCCTAGGACTCGGGTCTGATGAGGGAGTCAACATGGTAGGCATTCATGGAATCGGTGGGATAGGGAAATCAACACTTGCTCGTGCTGTGTATAACTTGATTGCTGATCAATTTGAAGGTTTTTGTTTCCTTGATGACATGCGAGAAAGGCCAATTAATAATCATGGTCTTGTACAACTCCAAGAAACACTGCTCTCTGAACTTCTCGGGGAGAAAGATATTAAAGTGGGAGATGTTAACAGAGGAATTCCAATAATAAAAAGAAGGCTTCATCGAAAGAAGATCCTTTTGATTCTTGATGGTGTTGACAAACCGAAGCAGTTAAAGGTACTTGCAGGAGGACAAGATTGGTTTGGCTCTGGCAGCAAGATCATAATCACAACAAGAGACAAGCATTTGCTAGCTGCTCATGGGATTGTTAAATCGTATGAGGTTAAACAGTTAAATGATGAACAAGCTCTTGAATTGTTTGGTTGGCATGCCTTTAAAAATAACAATATTGATCCAATTTATGAGGATATTTCAAAACGTGCAGTTTCGTATGCTCATGGCCTTCCATTGGCTTTGGAGGTGATAGGTTCTCACTTGTGTGGCAGAAGTTTAGATGTATGGAAATCTGCATTAGATAAATATGAAAGATTTCCTCATAAAGAGATCCAAAAAACACTTGAAGTTAGCTATGATGATTTGGACGATGATGAGAAGGGAATTTTTCTTGACATTGCTTGTTTCTTCAATTCTTACGAAATACGCTATGTCAAACAAATACTATACTTGCATGGTTTTCATGAGGAAAATGGTATTCAAGTGTTGACTGACAAATCTCTCATAAAGATTGACCGCAATGGTTTTGTGAGGATGCATGACTTAATTCAGGACATGGGCAGAGAAATCGTTAGGCAGGAATCAGCATTGGAGCCTGGCAGACGCAGTAGATTATGGTTTAACGAAGACATTGTTCATGTTTTGGAAGATGATACGGGAACTGACACAATTGAAGCCATCATCATGAACTTGTGCAAAGACAAAGAAGTGCAGTGGAGTGGAAAAGCCTTCGAGAAGATGAAAAACCTGAGAATTCTTATAATCAGAGATGCACGCTTTTCTAGAGGACCTCAGAATCTACCAAATAGTTTGAGAGTGCTCGATTGGAGTGGTTATCCATCACCATCTTTACCATCTGATTTTAATCCAAAGAATCTTGTGATACTTAGTCTGCCTGAAAGTTGCCTTAAAGCATTTAAACCACTCAAGGTGTTTGAGTCGTTGAACTTTATGGATTTTGAAGGTTGCAAGTTCTTAACCGAACTACCTAGCTTATCTGGAGTACCAAATTTGGGGGCACTGTGTCTTGATAACTGTACTAATTTAATTGAAATTCATGGTTCGGTTGGATTTCTTGATAGACTCGTGTTACTGAGTGCTCAAGGATGCACCCAACTAGAAATTTTGGTACCCTCCATCCACTTGACATCTCTAGAAACTCTGGACTTGAGGGGTTGTTCAAGTCTTGTGAGCTTCCCCGAAGTTTTGGGAATAATGGAGAATATAAGAGATGTTTATTTAGACGAGACTGCCATAGTTGAATTGCCATTTTCAATTGGAAATCTTGTGGGGCTCCAACGATTGTTCTTGAGGGAATGCAAAAAGCTGAACCAGCTGCCAAATAGTATCCGTATATTGCCTCAACTGGAGATAATAATGACTTACGGTCGTAGGGGTTTTCAATTATTTGAAGATACAGAACAAGTGAGCTCAGAAATGTTCCCAAAAGCCATGCTTGTTTTTGATACAGGCAATTTGTTGGTACTTGATGTGTATTATCATAACATAAACCCCAATAGTGTTGTCATAGAATTACGTCCACCTCCTGCGGATCCTGATTTTGAATCCTGGAGGGATTCTTCCTTCTACAGAGAGCAGGAAAAGTCAATGTGTTTCTGGTTCAGAAAGAAATTCCCCAAGATAGCTCTGTTTTATTTTACAGAACCTCGCTTGTACGAAGACAATGCGGTATTGGATTTCAAGTTCAGTGTAGTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATATTTTCCACACGAGGAAGGAAGACACTAACTCTTTGCTGTGATCTACAATGCAAAGTGGCGAGGGCATTTTCAGAGCATGAATGGAATGAAGTAGAGATTTTTTGGGAGTTAGAATACCTCTTGCCATGTGATTCTGAAAGGGTAATGGGGACCCAGTGCGGGATCACAACATTGGAAGGTGTAGATTTACCCTACATTCATGTCTACAAAGAAAACAACATGGAGGATATCAAAAGCGAAGAACCATCTCATCTCCCTCCGCCAGCCTTACAGAGAATTCAAAAGTTGATAATAAAGGAAACAAGTTAG 3012 0.3984 MTHKTLPHPSSFTYEWTYDVFLNFRGVDTRHNFTTDLYSSLTERGIHTFFDEKGLNAGEEITPSLFQAIQDSRIFIAIFSKKYAFSTFCLRELVMILECSKAQGRLFWPVFYDVDPSQVRHQSGTYAEALAKHEERFKDDKDEVKKWRDALHRAANISGSHFQHGSQSEYQFIRKIVEEVSKKVNRSPLYVADKPVALEPRVLEVTSLLGLGSDEGVNMVGIHGIGGIGKSTLARAVYNLIADQFEGFCFLDDMRERPINNHGLVQLQETLLSELLGEKDIKVGDVNRGIPIIKRRLHRKKILLILDGVDKPKQLKVLAGGQDWFGSGSKIIITTRDKHLLAAHGIVKSYEVKQLNDEQALELFGWHAFKNNNIDPIYEDISKRAVSYAHGLPLALEVIGSHLCGRSLDVWKSALDKYERFPHKEIQKTLEVSYDDLDDDEKGIFLDIACFFNSYEIRYVKQILYLHGFHEENGIQVLTDKSLIKIDRNGFVRMHDLIQDMGREIVRQESALEPGRRSRLWFNEDIVHVLEDDTGTDTIEAIIMNLCKDKEVQWSGKAFEKMKNLRILIIRDARFSRGPQNLPNSLRVLDWSGYPSPSLPSDFNPKNLVILSLPESCLKAFKPLKVFESLNFMDFEGCKFLTELPSLSGVPNLGALCLDNCTNLIEIHGSVGFLDRLVLLSAQGCTQLEILVPSIHLTSLETLDLRGCSSLVSFPEVLGIMENIRDVYLDETAIVELPFSIGNLVGLQRLFLRECKKLNQLPNSIRILPQLEIIMTYGRRGFQLFEDTEQVSSEMFPKAMLVFDTGNLLVLDVYYHNINPNSVVIELRPPPADPDFESWRDSSFYREQEKSMCFWFRKKFPKIALFYFTEPRLYEDNAVLDFKFSVVINGTKQFSSSCNYIFSTRGRKTLTLCCDLQCKVARAFSEHEWNEVEIFWELEYLLPCDSERVMGTQCGITTLEGVDLPYIHVYKENNMEDIKSEEPSHLPPPALQRIQKLIIKETS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1538g00008 1003 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Gabi1538g00008 1003 Gene3D - 182 347 IPR027417 -
Gabi1538g00008 1003 PRINTS Disease resistance protein signature 389 403 - -
Gabi1538g00008 1003 PRINTS Disease resistance protein signature 219 234 - -
Gabi1538g00008 1003 PRINTS Disease resistance protein signature 695 711 - -
Gabi1538g00008 1003 PRINTS Disease resistance protein signature 296 310 - -
Gabi1538g00008 1003 SMART till_3 17 157 IPR000157 GO:0007165
Gabi1538g00008 1003 Gene3D - 354 438 IPR042197 -
Gabi1538g00008 1003 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Gabi1538g00008 1003 Gene3D - 12 181 IPR035897 -
Gabi1538g00008 1003 Pfam NB-ARC domain 213 437 IPR002182 GO:0043531
Gabi1538g00008 1003 SUPERFAMILY L domain-like 544 779 - -
Gabi1538g00008 1003 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Gabi1538g00008 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Gabi1538g00008 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 785 IPR044974 GO:0006952
Gabi1538g00008 1003 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Gabi1538g00008 1003 Coils Coil 130 150 - -
Gabi1538g00008 1003 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gabi1538g00008 1003 Gene3D Ribonuclease Inhibitor 549 693 IPR032675 -
Gabi1538g00008 1003 Gene3D Ribonuclease Inhibitor 694 783 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1538g00008 Gabi-Chr1538 83398 87092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1538g00008 606 830 WRKY Transcription Factor Family AT4G12020 31.818 1.89e-10 63.5