Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1537g00017 ATGAGGACTTCAACACTTGCAATTATGCTCCTCTTGTGCTTTTCTTGTGACATACTAGTCTTTTGCCATGGAAGCTTGGACAGTGAGACTGAGAGCACTTTGAGAGTGCTTTTGGAAGTGAAATCATCGTTCTTGGAAGACCCAGAAAATGTTCTGAGTGATTGGTCAGAGAATAACACAGAGTATTGTAGTTGGAGAGGGGTGTCATGTGGGTTGAACGAGTTGAACTCAGAACCTTTGAATGACTCGGGGAAGCGAGTGGTTGGACTCAACCTGTCCGACTCGTCACTCACTGGGTCAGTATCACCTTCACTCGGTCATTTGCAAAACCTAGTCCACCTTGATCTCTCTTCTAACCGCCTCAACGGTATCATTCCAACTACCCTCTCTAACCTCACTTCATTGGAATCTCTGCTTCTCTACGCTAACCAACTCACTGGTCACATACCCACTGAGTTCGGCTCGTTACTGAGTCTCCGAGTTTTGCGAATCGGTGACAATGGACTCACGGGTGTGATTCCCACGTCACTTGGGAATCTGTTTAACCTTGTCTATCTTGGTTTAGCCTCATGCAGGTTCACTGGTCCGATTCCACCCCAACTCGGGAAACTCAGTGAGTTGGAGAATCTGATCCTGCAGGACAATGAGTTGATGGGTCCGATTCCGTCCGAGTTGGGGAACTGCTCAAGCCTTATCGTCTTCACTGCTGCTAACAACAGACTCAATGACTCGATCCCGAGTGAACTGGGTCAACTCAGGAAACTCCAGACTCTCAACCTTGCCAACAACAGCTTAACAGGGCAGATTCCGAGTCAACTCGGTCATATGAATGAGCTTGTTTATCTGAATTTCATGGGGAACAAACTCGAGGGTCATATTCCAACGTCTCTATCTCAACTGGGTAACCTTAAAAATCTCGACTTGTCCATGAACATGCTTAGTGGAGGAATTCCAGAGGTGTTAGGCAACATGGGTCAGTTAAAATACATGGTTCTCTCTGGGAATAAACTCTATGGGACCATTCCAAGAACCATATGTTCCAACGCAACAAGTTTGGAACACTTGATGATATCAGAGAGTGGACTTTATGGTGAGATCCCATCTGAGTTGAGTCAATGTCAATCACTGAAACAACTTGATTTGTCCAACAATTCTCTTAATGGATCAATACCTTTTGAGGTTTATGGGTTGGTGGGGCTAACTGATCTCTTGCTTCACAATAATAACTTGGTTGGTTCAATCTCTCCCTTCATAGGGAACCTCACTAACATGCAAACACTTGCATTGTTTCACAACAATTTGCAGGGTGCTCTGCCTAGAGAGATTGGGATGCTTGGGAAGATGGAAATACTGTATCTTTATGATAATCAGTTATCAGGGAAGATACCTTTGGAGATTGGTAACTGTTCAAGCTTGCAAATGATTGATTTCTTTGGAAACCATTTCAGTGGGGGAATTCCCTTCACTATTGGAAGGCTGAAAGACTTGAGTTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCTTCCACCCTTGGAAATTGTCATAAACTGAATGTGCTTGATTTGGCAGATAATCAACTCTCAGGTGGCATTCCTGCAACATTTGGATTTCTCAGAGACTTGAAGCTTCTCATGCTTTACAACAATTCTCTTGTAGGTATTCTCCCTCACCAACTGATAAATGTAGCAAACCTGACTAGAGTTAATCTTTCAAAGAACAAACTGAATGGTAGCATCTCTGCATTGTGTAGCTCTCGGTCGTTTCTTTCTTTTGATGTCACAGATAATGCATTTGACAGTGAAATCCCCTCTCAATTGGGAAATTCACACTCCCTTGAGCGGCTAAGATTAGGTAACAACAAATTTTCTGGTGAAATCCCAAGGACATTGGGGAAAATCATTGAATTGTCATTGTTAGACCTCTCGGGAAATTCACTCAAAGGACCAATACCGGATGAGCTTTCTTTGTGTAATAAACTTGCCTACATTGATTTAAACAATAACCTTTTATCTGGAAGCATACCACAATGGCTTGGAAGTTTGCCTCAGTTGGGAGTGCTTAAGCTCTCCTTCAATCAATTTTATGGGTCTCTTCCACTAAACCTTTTCAAAAGACCCAGGTTGCTAATTCTTTCCCTCAATAGCAATTCTCTTAGTGGAAGTCTCCCAGGTGATATTGTTGATCTTGCATCCCTTAATGTCCTTAGACTTGAACATAATAACTTCTCTGGACCAATTCCTCATGCAATAGGTAAGTTAAGCAATCTTTATGAGCTTCAGCTATCTAGAAATAGCTTTAATGGTGAGATACCAACTGAGATTGGAAATCTCCAAAATCTTCAAAGCATTTTAAACCTCAGTTATAATAATCTCTCTGGTCATATCCCACCTTCTCTTGGTATGCTGTCAAAATTGGAAGCACTTGATCTTTCTCACAATCAACTCACTGGAGAAATCCCTCTACTAGTTGGTGAAATGAGGAGCTTGGAAAAGCTTAACATCTCTTACAATAACTTTCAAGGTGCATTGGATAAGCAATTCTCTCGCTTTCCATATGAGGCATTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGGGCGTTGCAATCATGTCGATGCTTCCCATAATAAGCTATCAGGTAAGACAGCAGTGGTTATAGTCTCTGCCATTTCAACTTTAGCTGCAATTGCACTACTAGTACTTGCAATGAGCATGTTCTTGAAAAACAAGAAAGAATTTTTCAGGAAAGGCAGTGAAGTGAATTGTCTTTACTCCTCCTCTTCATCACGAGCACAAAAACGACCACTCTTCCCACTAAATGCTGCTGGAAAGCGAGATTTCAGGTTGGAAGATATCATGAATGCTACAAACAATTTAAGTGATGACTTCATAATTGGTTCTGGAGGTTCTGGGACAGTCTACAGAGTTCAATTTCCCACTGGAGAGACTGTGGCTGTCAAGAAGATTTCATGGAAAGATGATTATTTGCTAAACAAAAGCTTTATAAGAGAAGTTAAGACTTTAGGGAGTATTAAGCATAGACATCTGGTGAAACTCATAGGATGTTGTAGCAATAGAAACAAAGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTACATGGAAACAAAGCAAAGGGTAACCTTGATTGGTATGCAAGGTTCAAAATTGCTGTGGGATTAGCCCAAGGAGTGGAGTACCTCCATCATGACTGTGTACCAAAGATCATTCACAGGGACATCAAATCTAGCAACATATTGTTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTTGCAAAAACACTCATTGAGAATCATGACTCTATTACTGAGTCCAATTCTTGTTTTGCTGGGTCTTATGGTTACATGGCCCCAGAGTATGCATACTCAATGAAGGCAACTGAGAAAAGTGATGTTTATAGCATTGGAATTGTGCTTATGGAACTTGTTAGTGGTAAAATGCCAACAGATGAAGCTTTCAGAGCTGAGATGAACATGGTGAGATGGGTGGAGATGCACATTGACATGCAAGGCACTGCATGTGAGGAATTGATAGATCCTGAGCTGAAACCCCTTTTGCCTGGTGAAGAGTTTGCTGCATTCCAAGTACTTGAGATAGCCATACAGTGTACTAAAAATACACCACAGGAGAGGCCATCATCAAGACAAGTAAGCGATCTTCTTGTGCATGTATTCAACAACAAAAAGGTGGACTTTGAGAAGATGAATTTGGATCATTACAAGTGA 3795 0.4174 MRTSTLAIMLLLCFSCDILVFCHGSLDSETESTLRVLLEVKSSFLEDPENVLSDWSENNTEYCSWRGVSCGLNELNSEPLNDSGKRVVGLNLSDSSLTGSVSPSLGHLQNLVHLDLSSNRLNGIIPTTLSNLTSLESLLLYANQLTGHIPTEFGSLLSLRVLRIGDNGLTGVIPTSLGNLFNLVYLGLASCRFTGPIPPQLGKLSELENLILQDNELMGPIPSELGNCSSLIVFTAANNRLNDSIPSELGQLRKLQTLNLANNSLTGQIPSQLGHMNELVYLNFMGNKLEGHIPTSLSQLGNLKNLDLSMNMLSGGIPEVLGNMGQLKYMVLSGNKLYGTIPRTICSNATSLEHLMISESGLYGEIPSELSQCQSLKQLDLSNNSLNGSIPFEVYGLVGLTDLLLHNNNLVGSISPFIGNLTNMQTLALFHNNLQGALPREIGMLGKMEILYLYDNQLSGKIPLEIGNCSSLQMIDFFGNHFSGGIPFTIGRLKDLSFLHLRQNELVGEIPSTLGNCHKLNVLDLADNQLSGGIPATFGFLRDLKLLMLYNNSLVGILPHQLINVANLTRVNLSKNKLNGSISALCSSRSFLSFDVTDNAFDSEIPSQLGNSHSLERLRLGNNKFSGEIPRTLGKIIELSLLDLSGNSLKGPIPDELSLCNKLAYIDLNNNLLSGSIPQWLGSLPQLGVLKLSFNQFYGSLPLNLFKRPRLLILSLNSNSLSGSLPGDIVDLASLNVLRLEHNNFSGPIPHAIGKLSNLYELQLSRNSFNGEIPTEIGNLQNLQSILNLSYNNLSGHIPPSLGMLSKLEALDLSHNQLTGEIPLLVGEMRSLEKLNISYNNFQGALDKQFSRFPYEAFEGNLHLCGASLGRCNHVDASHNKLSGKTAVVIVSAISTLAAIALLVLAMSMFLKNKKEFFRKGSEVNCLYSSSSSRAQKRPLFPLNAAGKRDFRLEDIMNATNNLSDDFIIGSGGSGTVYRVQFPTGETVAVKKISWKDDYLLNKSFIREVKTLGSIKHRHLVKLIGCCSNRNKGTGWNLLIYEYMENGSVWDWLHGNKAKGNLDWYARFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKTLIENHDSITESNSCFAGSYGYMAPEYAYSMKATEKSDVYSIGIVLMELVSGKMPTDEAFRAEMNMVRWVEMHIDMQGTACEELIDPELKPLLPGEEFAAFQVLEIAIQCTKNTPQERPSSRQVSDLLVHVFNNKKVDFEKMNLDHYK 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1537g00017 1264 SMART serkin_6 963 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1537g00017 1264 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 198 - -
Gabi1537g00017 1264 FunFam Leucine-rich repeat receptor-like protein kinase 1044 1261 - -
Gabi1537g00017 1264 SUPERFAMILY RNI-like 90 409 - -
Gabi1537g00017 1264 SUPERFAMILY RNI-like 317 650 - -
Gabi1537g00017 1264 FunFam Leucine-rich repeat receptor protein kinase EMS1 199 294 - -
Gabi1537g00017 1264 PRINTS Leucine-rich repeat signature 805 818 - -
Gabi1537g00017 1264 PRINTS Leucine-rich repeat signature 376 389 - -
Gabi1537g00017 1264 Pfam Leucine rich repeat 90 145 IPR001611 GO:0005515
Gabi1537g00017 1264 Gene3D Ribonuclease Inhibitor 30 198 IPR032675 -
Gabi1537g00017 1264 Gene3D Ribonuclease Inhibitor 294 365 IPR032675 -
Gabi1537g00017 1264 Gene3D Transferase(Phosphotransferase) domain 1 1044 1262 - -
Gabi1537g00017 1264 ProSiteProfiles Leucine-rich repeat profile. 807 829 IPR001611 GO:0005515
Gabi1537g00017 1264 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Gabi1537g00017 1264 SUPERFAMILY Protein kinase-like (PK-like) 943 1244 IPR011009 -
Gabi1537g00017 1264 ProSitePatterns Protein kinases ATP-binding region signature. 969 992 IPR017441 GO:0005524
Gabi1537g00017 1264 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 490 1244 - -
Gabi1537g00017 1264 Pfam Leucine Rich repeats (2 copies) 807 842 IPR025875 -
Gabi1537g00017 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1089 1101 IPR008271 GO:0004672|GO:0006468
Gabi1537g00017 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 295 392 - -
Gabi1537g00017 1264 CDD STKc_IRAK 969 1244 - -
Gabi1537g00017 1264 Gene3D Ribonuclease Inhibitor 540 876 IPR032675 -
Gabi1537g00017 1264 Gene3D Ribonuclease Inhibitor 375 539 IPR032675 -
Gabi1537g00017 1264 FunFam Uncharacterized protein 393 486 - -
Gabi1537g00017 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 487 583 - -
Gabi1537g00017 1264 SUPERFAMILY L domain-like 589 868 - -
Gabi1537g00017 1264 Gene3D Phosphorylase Kinase; domain 1 925 1043 - -
Gabi1537g00017 1264 Gene3D Ribonuclease Inhibitor 199 293 IPR032675 -
Gabi1537g00017 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 924 1043 - -
Gabi1537g00017 1264 Pfam Leucine Rich Repeat 254 274 IPR001611 GO:0005515
Gabi1537g00017 1264 SMART LRR_typ_2 805 827 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 493 517 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 684 708 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 108 131 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 132 155 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 324 348 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 829 860 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 756 780 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 252 276 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 300 323 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 397 421 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 156 179 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 541 564 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 204 228 IPR003591 -
Gabi1537g00017 1264 SMART LRR_typ_2 445 469 IPR003591 -
Gabi1537g00017 1264 Pfam Protein kinase domain 968 1240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1537g00017 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 584 876 - -
Gabi1537g00017 1264 ProSiteProfiles Protein kinase domain profile. 963 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1537g00017 Gabi-Chr1537 164630 168531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1537g00017 171 726 Receptor kinase-like Gene Family AT5G56040 35.163 9.13e-84 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1537g00017 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1537g00017 - - gmx:100797153 1890.93