Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1537g00016 ATGGCGTCGTCCCAAGTTGAAATCGCTTCTTCTTCTCCCTTTGGTTGTGTTCTGAGGGACCGTAATCACCGTGATGGATGCAGGGAAAGCAACGTTAAAGCCACGCATGCCGCTTTACAAAGAAACATCAAGAACTTCGTCATGGACCATATCAACACGTGCATGTCCATGTCTTCTGATTCTGCAACAAACGAGAACAGCAACCAGAATCAGATGAACAACGATGGTTCTTGGGTTTCAAAGGCTGCCAAGAACAACAACCACCACCTTGAGAGGCTTCGTTTCGCAAGAAACAATGACGACAACAACAACAACAAAGATGAATCTTCGTTGGCTTCATTGATCAGTCCAAGACACTCGCGGCTTCTTGATCGATGGTCTGCAAGACAAGCTCGAGAGATGGTGTCACCATTGGAGAATGAGCCTGAGTTGTTAGCCATTGACAACAACAACAACAACATGATGTTTGCAAGGACAAGTAGTTTTACCTCTGATGAATGCTCATCAGAAATCTCAAATCTTGGTGCTTCTTCCCTTGTTCAGATATGGGAAAAGAGGCTTAACATCAACCAATCCAATGGCTCCAAACCAAACACCCCAGTCTCTAATGTTGAAGAGCAATGCAGAGGATCAGAAGCTGTGGAATGTTTCGATGGACCTTCAGGGAATGAAGAATCATTCCCTGATTGGGAATCAGGACAGAGTGATCATTCGGTTTCGCCAAGAGGGAGGTGGTCTTCTTCAGAGAGTGATAGGGTAAGCGTTGCAGATATCATAAAGAAGCTCACTGCTACAAATCAAGCTCTGAGTCCACCACCATGCTTTGGTGATGATAATGAACATGAAGGGTCTGGTAGCAGCGTCACAGGTTCTCCTTGTAGAGACCGTGACTGTGGTGGTTTCACACCAGAACATTTAGAGCAAAGAGCTTTTCCTCAGGTTACTTGTTACCCAAGAATTAGAGGGCGCCGTGCATTCAATGATTTGCTTATGCAGTTGCAGCGAGATCGCCATGGTGAGCTCAAGAACCTGGAAGAGCGTAGAGCAGTTTCCAAGTTCTCACAAAGAGGTCGCATTCAGTCTTTGCTTCGGCTTAGATTATTACAACGTGGCGTGGCAGCTAATGATCAATCCCGCCAAAAGTCAACAGCATCTGAAGTGAACAGACAACCACAGGGATCTGCAATTATGCAACTAAGGACAAGATTTAGCACTGGAGTTGAACCTAGAACTACAGTCCAGGCAGAAGCATCTGACCCAAGAAGTCCTCATAAGGAGAAAGTAAACAACAGCACCAAAATGGATAACTCTCCCACTGCTAATCAACTCAGCAAAGACACAAGCAGCCAAACTGCTCAAGGCACTGCTAATCACACTACAGAATCCACACAAAAGTCAGTATCTCAGACTAGTGTGGATCATAAAAGAGAAGAGGCTCATCTAAATTCAAATGCCACGTTCCAAGAAACATGTTTTAAGGCTCAACATGATAACTCGCAAGAAACAGCTGAGGCAACAACAACCCTGACTGATTCAAATCTAAATGAGATGGCAGATAAGGTAGAGACGAGCAACCAACAGTATGCTATGGCTGAAAGAAGTTATGATGGGACAATAGAAGAGGAAGAGGAAAGTAACCAGCATTATGCTGAAACTAGTAACTATGCTGAAAGCAATTATGATGAGATAGAGGTCATTGACCAGAATTATGATCATACTAGTTATGACTGGATCAGTGAAATTTCTCGTCCTAGGAGCTATTGGGAAGAGCGCAGACAAGCATGGTATAGAGAGATGCAAGACACTGGTTCTCAAAAAGAGGATATACGGAAGCTTCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGGGAAACAATGGATAGATTGATGGAAACTCATAGGGGAACACAAACACATTTAGTCAGCGATCAAGACGATGATGAAGACAACCAAGGGTTGATAGCATTTTTACAAGAACACTTGCATTCTAGAAGCACTCCTCAAGAAGATGGAAGAGAGAAAGGAGAAGAGTTAGAGGGAGAAGAGGAAGAGGAGGAGAGGAGAAATGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGGTAGAGGAGCAGGAGAGGGAGAGCTTGATAAGTGGTTCATATCATGAAGTTGGTGATTATTCTAATCAATCATTATATCACGAAGTTGGTGATTATTCTAATCAATCCTCATCATGGAGTTACAGAGGCATTGAAGCCCGTGATGATTTTGATAGAGCTCCATCTACATCCCCACAACCTTATCAATCTCAGTCTTTATATCATCAGGATAGCAGGCGATACTCTTCTTCCACCAATCATCATTCAATTGAAATGGAACTCATATATGATTTGAGAGGGCATATGGATCAACTTTATCATGAGATGTCTGAGCTAAGGAAATCAATAAAGAGCTGCATCGATATGCAGATGCAATTACAACAATCCACGAACCAAGAGGCTCCGAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTAGACACAGTTTTATACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCAATGAGTTGCAATGGAATAGTGGGAAATGTCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGAGTATATGTTGATGGTTAG 2676 0.4301 MASSQVEIASSSPFGCVLRDRNHRDGCRESNVKATHAALQRNIKNFVMDHINTCMSMSSDSATNENSNQNQMNNDGSWVSKAAKNNNHHLERLRFARNNDDNNNNKDESSLASLISPRHSRLLDRWSARQAREMVSPLENEPELLAIDNNNNNMMFARTSSFTSDECSSEISNLGASSLVQIWEKRLNINQSNGSKPNTPVSNVEEQCRGSEAVECFDGPSGNEESFPDWESGQSDHSVSPRGRWSSSESDRVSVADIIKKLTATNQALSPPPCFGDDNEHEGSGSSVTGSPCRDRDCGGFTPEHLEQRAFPQVTCYPRIRGRRAFNDLLMQLQRDRHGELKNLEERRAVSKFSQRGRIQSLLRLRLLQRGVAANDQSRQKSTASEVNRQPQGSAIMQLRTRFSTGVEPRTTVQAEASDPRSPHKEKVNNSTKMDNSPTANQLSKDTSSQTAQGTANHTTESTQKSVSQTSVDHKREEAHLNSNATFQETCFKAQHDNSQETAEATTTLTDSNLNEMADKVETSNQQYAMAERSYDGTIEEEEESNQHYAETSNYAESNYDEIEVIDQNYDHTSYDWISEISRPRSYWEERRQAWYREMQDTGSQKEDIRKLLERRTVSTFLSSDFRETMDRLMETHRGTQTHLVSDQDDDEDNQGLIAFLQEHLHSRSTPQEDGREKGEELEGEEEEEERRNEEEEEEEEEEEEKVEEQERESLISGSYHEVGDYSNQSLYHEVGDYSNQSSSWSYRGIEARDDFDRAPSTSPQPYQSQSLYHQDSRRYSSSTNHHSIEMELIYDLRGHMDQLYHEMSELRKSIKSCIDMQMQLQQSTNQEAPKKGNCCICYEMKVDTVLYRCGHMCACLKCANELQWNSGKCPICRAKIVDVVRVYVDG 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1537g00016 891 CDD mRING-HC-C3HC5_NEU1 836 888 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 679 709 - -
Gabi1537g00016 891 Pfam Zinc finger, C3HC4 type (RING finger) 836 883 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 190 209 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 190 206 - -
Gabi1537g00016 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 822 890 IPR013083 -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 227 249 - -
Gabi1537g00016 891 SMART ring_2 839 877 IPR001841 -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 663 722 - -
Gabi1537g00016 891 Coils Coil 677 714 - -
Gabi1537g00016 891 ProSiteProfiles Zinc finger RING-type profile. 839 878 IPR001841 -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 761 779 - -
Gabi1537g00016 891 Coils Coil 514 534 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 267 292 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 214 249 - -
Gabi1537g00016 891 SUPERFAMILY RING/U-box 838 884 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 756 782 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 432 469 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 373 477 - -
Gabi1537g00016 891 PANTHER BNAC05G24000D PROTEIN 1 890 - -
Gabi1537g00016 891 MobiDBLite consensus disorder prediction 373 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1537g00016 Gabi-Chr1537 149543 155093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1537g00016 839 887 C3H Transcription Factor Family AT3G06140 42.857 3.75e-07 51.6