Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1536g00010 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAAATTTTCACTCAGTTTTCTACCAAGACAAACAGGATGATGGCATAATTGATCTTGGTCTTAGTCTCAGAACTGTTCAACGTGAACCATATCATTCTTCTGGCAACTTGTATGATGAAGACATTATGAATTGGCCTCACTCTAATCTCAATCTCAAGAATTCAAGCACCATGCAAACTAGATCTGTCCATGGAAATTTTGATGAAGAGATAGAGGGGGTTCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTACTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCTCTATCTGGTGTGAGATTGTTTCAATCGGGGTCAGAATACTCATTGTTCTTCAAAGACAGAGAAGATAATTGGAGGGCTGTGGGTGATGTCCCTTGGAAGTAG 495 0.396 MDSNTSSFLLNSSNFHSVFYQDKQDDGIIDLGLSLRTVQREPYHSSGNLYDEDIMNWPHSNLNLKNSSTMQTRSVHGNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLSGVRLFQSGSEYSLFFKDREDNWRAVGDVPWK 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1536g00010 164 ProSiteProfiles PB1 domain profile. 92 164 IPR000270 GO:0005515
Gabi1536g00010 164 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 163 IPR003311 GO:0005634|GO:0006355
Gabi1536g00010 164 Pfam AUX/IAA family 54 164 IPR033389 -
Gabi1536g00010 164 SUPERFAMILY CAD & PB1 domains 92 164 - -
Gabi1536g00010 164 Gene3D - 86 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1536g00010 Gabi-Chr1536 82651 83566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1536g00010 82 163 B3 DNA Binding Superfamily AT1G34390 34.146 2.09e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1536g00010 AUX_IAA 1.4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1536g00010 K14484 - gmx:100793397 291.197