Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1536g00007 ATGACAATTGAGCGCTTTCTAAAGCAACATGGTTCTCTTCAATTAAGAAGGTACAGTTACTCTGAGATAAAGAAAGTCACTGATTGTTTCAAAGTCAAATTAGGAGAGGGAGGATATGGGAGCGTATATAAAGGAAAGCTACAAGATGGGAGTCTTGTTGCAGTCAAGCTTTTAAGTAAACTTGAAGGAACTGGGGAGGAATTCATCAATGAAATTGCAAGCATTAGCAGGACATCTCATGTTAACGTTGTCACTCTTGTGGGGTTTTGTTTCCAAGGTTCAAAACGAGCTCTAATTTATGAACTCATGCCTAATGGATCCCTCGAGAAGTTCATATATGAAGAAAACTCCATGTTAGTTGGTCGGCAATTGGATTGCAAAACTTTGTATGACATTGTCAATGGTGTTGCTCGTGGACTAGACTATTTGCACAGAGGCTGCAATACTAGAATTTTGCATTTTGACATAAAACCTCATAACATTCTCTTAGATGAGAATTTCAGCCCCAAGATTTCAGATTTTGGACTTGCAAAAATTTGCACAAGAAAAGAAAAGGTATTTTCTAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGATATGGTCGGGATGAGAAAAAATATTAATGCTCAAGTTGACCGTTCCAGTGAAATATATTTTCCTCGTTGGATTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTCTTCGGAATATAAGAAATGAAAGTGATGACGAAAAGGTGAGGAAGATGACAATAGTGGGCTTATGGTGCATACAGACAGACCCTTCAACTCGACCAGCCATGAGTAAAGTGGTGGAAATGCTAGAAGGTAGCGTTGAGCTGCTGCAAATACCACCCAAACCTTTTTTGTGGTCTCCTTCAACGTCCCCAGTCCATTTGTCATGTGAGACATTCTAG 948 0.3903 MTIERFLKQHGSLQLRRYSYSEIKKVTDCFKVKLGEGGYGSVYKGKLQDGSLVAVKLLSKLEGTGEEFINEIASISRTSHVNVVTLVGFCFQGSKRALIYELMPNGSLEKFIYEENSMLVGRQLDCKTLYDIVNGVARGLDYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICTRKEKVFSRNFGAVSHKSDVYSYGMMVLDMVGMRKNINAQVDRSSEIYFPRWIYNRLESNQELGLRNIRNESDDEKVRKMTIVGLWCIQTDPSTRPAMSKVVEMLEGSVELLQIPPKPFLWSPSTSPVHLSCETF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1536g00007 315 FunFam S-receptor-like serine/threonine-protein kinase 2 102 - -
Gabi1536g00007 315 Gene3D Phosphorylase Kinase; domain 1 4 102 - -
Gabi1536g00007 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gabi1536g00007 315 SMART serkin_6 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00007 315 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 304 IPR045874 GO:0004672
Gabi1536g00007 315 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Gabi1536g00007 315 PIRSF ILK 19 293 - -
Gabi1536g00007 315 FunFam PR5-like receptor kinase 103 297 - -
Gabi1536g00007 315 Gene3D Transferase(Phosphotransferase) domain 1 103 298 - -
Gabi1536g00007 315 ProSiteProfiles Protein kinase domain profile. 28 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00007 315 Pfam Protein kinase domain 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00007 315 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1536g00007 Gabi-Chr1536 34963 43264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1536g00007 11 298 Receptor kinase-like Gene Family AT5G38260 52.597 4.55e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1536g00007 Pkinase 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1536g00007 - - gmx:100787576 489.96