Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1536g00006 ATGCCGGTAGTGGCAACAGTGTCCTTGGTGACTGCTGGAGTTGCAGTGCTGATGGTCTCGGCTTGCTGCTTTAGGACAAAGATCTTCTCTCCCCCATATCTTTTGTTTTGGAAGGCCAATCCAACCCATAAGATTATTGAGGAGTTTTTGAAGGAACATGGACCCCTTCCTACCGCCAGGTACAGTTATTCAGAGGTCAAGAAAATTACCAACTCTTTCAGAAACAAATTAGGCCAAGGAGGATACGGATGTGTATACAAAGGGAAGTTACATGATGGACGTGTTGTTGCCGTCAAGATTTTAAGCAAATCAAAAGGTAACGGAGAAGAATTCATCAATGAAGTTGCAAGTATTAGTAAGACTTCACATGTTAACATTGTTACTCTTCTTGGATTCTGTTTGGACGGTTCCGAAAGGGCTCTAATATACGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGACAAAAATCCGTTACAGGTTGCTCGCCAATTGGATTGCAAAACATTGTATGATATTGCAATTGGGGTTGCTCGTGGGTTAGAGTACCTGCATAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTCTTGGATGAGAATTTCAGCCCCAAGATTTCAGATTTTGGACTTGCAAAAATTTGCACAAGAGAAGAAAGTATAGTATCCATATTTGGTGTAAGAGGAACTGCAGGGTATATTGACCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGGTTGGGAGGAGAAAAAATATTAATGATCAAGTTGACCGTTCCAGTGAAATATATTTTCCTCATTGGATTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTCTTCGGAACATAAGAAATGAAAGTGATGACGAAAAGATGAGAAAGATGACAATAGTGGGCTTATGGTGCATCGAAACCGACCCTTCAACTCGACCAGCCATAAGTAAAGTGATAGAAATGCTAGAAGGTAGTATTGAGTTGTTGCAAGTACCGCCCAAACCTTTTCTGTCCTCTCCTTCAACCTCTCCAGTCCATTTGTCATGTGAGACACTGTAG 1131 0.4023 MPVVATVSLVTAGVAVLMVSACCFRTKIFSPPYLLFWKANPTHKIIEEFLKEHGPLPTARYSYSEVKKITNSFRNKLGQGGYGCVYKGKLHDGRVVAVKILSKSKGNGEEFINEVASISKTSHVNIVTLLGFCLDGSERALIYEFMPNGSLEKFIYEDKNPLQVARQLDCKTLYDIAIGVARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICTREESIVSIFGVRGTAGYIDPEVFSRNFGAVSHKSDVYSYGMMVLEMVGRRKNINDQVDRSSEIYFPHWIYNRLESNQELGLRNIRNESDDEKMRKMTIVGLWCIETDPSTRPAISKVIEMLEGSIELLQVPPKPFLSSPSTSPVHLSCETL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1536g00006 376 Gene3D Transferase(Phosphotransferase) domain 1 146 360 - -
Gabi1536g00006 376 ProSiteProfiles Protein kinase domain profile. 71 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00006 376 SUPERFAMILY Protein kinase-like (PK-like) 54 347 IPR011009 -
Gabi1536g00006 376 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 364 IPR045874 GO:0004672
Gabi1536g00006 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gabi1536g00006 376 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Gabi1536g00006 376 SMART serkin_6 71 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00006 376 FunFam Suppressor of npr1-1 constitutive 4 44 145 - -
Gabi1536g00006 376 Gene3D Phosphorylase Kinase; domain 1 48 145 - -
Gabi1536g00006 376 FunFam PR5-like receptor kinase 146 358 - -
Gabi1536g00006 376 Pfam Protein kinase domain 75 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1536g00006 Gabi-Chr1536 32287 34205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1536g00006 60 362 Receptor kinase-like Gene Family AT4G18250 58.842 2.79e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1536g00006 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1536g00006 - - gmx:100778621 603.979