Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1536g00005 ATGCTACTTCCCTTGGCGGCTGGAGATGGGAATGGCTACAAAGGAGAGTGCCCTCCTTCATTTCAATGTGGATATGTTGGCAATATCAGCTTCCCTTTCACTAAAATAGAACGCCAAGACTGTGGCTTATTGGCCATACACAATTGTGATGATCATCCAATGAAGCCAAAAGAGATCCAATTAGTCAATCAAGGGAAATGGTTTGAAGTTATACGCGTTGTTGAACAGGTTCCTCGTAGTCCTACTGTTACAAATTTTCAAGTTAGAGACAAGTATCTGTATCAACTTCTGCAATCCAGAAATTGTGAAGCTTTCACGTACAACTGTACGCTTCCTCCCACCTTCCATTTTGGTGCTTTTCGTATCGGAACTAAAGCAACCCTGTTCAGGTGCAACCAAACCCTCCATGTCAGGCCCCCAATATATATGTTTAATTATACAAAGTGCCATGACTACGATCTTTACTACGGGCCAGAAATCACTGCTAATTATGCTTTGACAGCATGTGCAAAGGTCCAGCTTCCAATTAAAGACGTGCCCGACTCTTATGACCCATTTACATTCGTAAACGCAGATATCAACGTTGAAGTAAAATTAACAGATGAATGTGCCAATTGTCACCATTTACAGAGAGGGCAGTGTCAACTCGACAACGGAGGGAGATTTTTTTGTGCCAACAGTTACGAGAATATCATAAAGAAGATGCCGGTAGTGGCAACAGTGTCCTTGGTGACTGCTGGAGTTGCAGTGCTGATGGTCTCGGCTTGCTGCTTTAGGACAAAGATCTTCTCTCCCCCATATCTTTTGTTTTGGAAGGCCAATCCAACCCATAAGATTATTGAGGAGTTTTTGAAGGAACATGGACCCCTTCCTACCGCCAGGTACAGTTATTCAGAGGTCAAGAAAATTACCAACTCTTTCAGAAACAAATTAGGCCAAGGAGGATACGGATGTGTATACAAAGGGAAGTTACATGATGGACGTGTTGTTGCCGTCAAGATTTTAAGCAAATCAAAAGGTAACGGAGAAGAATTCATCAATGAAGTTGCAAGTATTAGTAAGACTTCACATGTTAACATTGTTACTCTTCTTGGATTCTGTTTGGACGGTTCCGAAAGGGCTCTAATATACGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGACAAAAATCCGTTACAGGTTGCTCGCCAATTGGATTGCAAAACATTGTATGATATTGCAATTGGGGTTGCTCGTGGGTTAGAGTACCTGCATAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTCTTGGATGAGAATTTCAGCCCCAAGATTTCAGATTTTGGACTTGCAAAAATTTGCACAAGAGAAGAAAGTATAGTATCCATATTTGGTGTAAGAGGAACTGCAGGGTATATTGACCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGGTTGGGAGGAGAAAAAATATTAATGATCAAGTTGACCGTTCCAGTGAAATATATTTTCCTCATTGGATTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTCTTCGGAACATAAGAAATGAAAGTGATGACGAAAAGATGAGAAAGATGACAATAGTGGGCTTATGGTGCATCGAAACCGACCCTTCAACTCGACCAGCCATAAGTAAAGTGATAGAAATGCTAGAAGGTAGTATTGAGTTGTTGCAAGTACCGCCCAAACCTTTTCTGTCCTCTCCTTCAACCTCTCCAGTCCATTTGTCATGTGAGACACTGTAG 1833 0.4086 MLLPLAAGDGNGYKGECPPSFQCGYVGNISFPFTKIERQDCGLLAIHNCDDHPMKPKEIQLVNQGKWFEVIRVVEQVPRSPTVTNFQVRDKYLYQLLQSRNCEAFTYNCTLPPTFHFGAFRIGTKATLFRCNQTLHVRPPIYMFNYTKCHDYDLYYGPEITANYALTACAKVQLPIKDVPDSYDPFTFVNADINVEVKLTDECANCHHLQRGQCQLDNGGRFFCANSYENIIKKMPVVATVSLVTAGVAVLMVSACCFRTKIFSPPYLLFWKANPTHKIIEEFLKEHGPLPTARYSYSEVKKITNSFRNKLGQGGYGCVYKGKLHDGRVVAVKILSKSKGNGEEFINEVASISKTSHVNIVTLLGFCLDGSERALIYEFMPNGSLEKFIYEDKNPLQVARQLDCKTLYDIAIGVARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICTREESIVSIFGVRGTAGYIDPEVFSRNFGAVSHKSDVYSYGMMVLEMVGRRKNINDQVDRSSEIYFPHWIYNRLESNQELGLRNIRNESDDEKMRKMTIVGLWCIETDPSTRPAISKVIEMLEGSIELLQVPPKPFLSSPSTSPVHLSCETL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1536g00005 610 Gene3D Phosphorylase Kinase; domain 1 283 379 - -
Gabi1536g00005 610 FunFam Suppressor of npr1-1 constitutive 4 278 379 - -
Gabi1536g00005 610 SUPERFAMILY Protein kinase-like (PK-like) 288 581 IPR011009 -
Gabi1536g00005 610 Gene3D Transferase(Phosphotransferase) domain 1 380 594 - -
Gabi1536g00005 610 SMART serkin_6 305 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00005 610 PANTHER RUST RESISTANCE KINASE LR10-RELATED 272 598 IPR045874 GO:0004672
Gabi1536g00005 610 ProSiteProfiles Protein kinase domain profile. 305 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00005 610 FunFam PR5-like receptor kinase 380 592 - -
Gabi1536g00005 610 Pfam Protein kinase domain 309 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1536g00005 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Gabi1536g00005 610 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1536g00005 Gabi-Chr1536 31913 34205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1536g00005 17 610 Receptor kinase-like Gene Family AT5G38260 38.486 2.61e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1536g00005 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1536g00005 - - gmx:100783861 816.609