Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1536g00001 ATGGTTTCGAGGTCATATTCTAACTTGTTAGATCTTACTTCATGTGGTTCCCCAACTTTTGGTCGCGAGAAGAAGAGGCTTCCTCGGGTGGCAACTGTTACTGGAGTACTGTCTGAACTAGATGATGAGACCAGCAACAGTGTTGGCTCTGATGCTCCCTCCTCCATCTCTCAAGAGAGGATGATTATTGTTGGTAACCAGCTTCCATTAAAGGCACACAGAAAAGACAATGGTACGTGGGACTTCACCTGGGATGAGGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGGGATGATGTGGAAACTATCTATATTGGTTGTCTTAAAGAGGAAATTGAGCCAAGTGAGCAAGATGATGTTGCTCAGTTTTTGCTTGACACTTTCAAATGTGTACCCACGTTCCTACCTCCCGAGCTTTTTAGTAAATTCTATCTTGGATTCTGCAAACAACATCTATGGCCTTTATTTCACTACATGCTTCCACTGTCACCTGATCTTGGCGGTCGATTCGATAGGTCCCTTTGGCAAGCTTATGTGTCTGTGAACAAGATATTTGCGGATAAAGTGATGGAAGTTATTAGCCCTGATGATGACTTTGTGTGGGTTCATGACTACCATTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAACAGGGTGAGGCTAGGATTCTTCCTCCATAGTCCATTCCCTTCGTCTGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTGAACTCTGACCTTATTGGGTTTCATACTTTTGATTATGCCAGGCATTTCCTCTCCTGTTGCAGTAGAATGCTTGGGCTTTCTTATCAATCCAAGCGGGGCTATATTGGTCTTGAGTACTATGGAAGAACTGTAAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTTCAATCAGTCATGAATCTTCTTGAGACGGAAAGCAAGGTTGCAGAGTTACGAAACCATTTCAGAGGTCAAACTGTGATGCTTGGGGTCGATGACATGGATATATTCAAAGGAATCAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTCACAACATCCTGATAAGAGGGGCAAAGTTGTTCTGATCCAAATTGCAAACCCTGCAAGAGGCCGGGGAAAAGATGTACAGGAGGTACAGAGTGAAACTTATGCCACAGTGAAAAGGATAAATGATACATTTGGAAGGTCTGGTTACACACCTGTAATCTTGATTGATACACCACTTCAGAGTTATGAGCGAATTGCTTATTATGTGATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAATATATCATTTGTAGACAAGGAAGTGAGAAGATAGATGAGATTTTAGGGATAAACCCATTTACCCAAAAGAAGAGCATGTTGGTGGTGTCTGAGTTCATTGGATGCTCCCCATCATTAAGTGGGGCAATTCGAGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGAATCTGCACTGATAGTCCCAGAGTCTGAAAAACAGATGCGGCATGAAAAGCACTATAGGTATGTTAGTACACATGATGTTGCATATTGGGCACGTAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGAGATCATCTGAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGGTTTCGAGTAATCGCTCTGGATCCAAACTTTAGAAAGCTATCTGTGGAACATATTGTTTCAGCTTATAAGAGGACCAAGCATAGGGCAATTCTCTTGGATTATGATGGTACTATGGTGCAGCCCGGATCAATTAGTACAACACCTAATGCTGAAGCTGTTGGAATCTTAAACAGCTTGTGCAGGGACACCAATAATTGTGTTTTCATTGTAAGTGGAAAGGAGAGAAAGACTCTTAATGAATGGTTTTCTTCTTGTGAAAGACTGGGAATCGCCGCAGAGCATGGTTATTTTGTGAGGACAAGTTATAATGCAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATATGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAGAGTGCTCTTGTTTGGAATTATGAGTATGCAGACCGAGATTTTGGTTCATGTCAGGCTAAGGAGCTTTTTGATCATCTGGAAAGTGTTCTTACCAATGAACCTGTTTCTGTTAAAAGCGGTCCAAACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCAGAACGTCTTCTCTTAACAAAGAAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGGGATGACAGATCGGATGAGGACATGTTTGAGGTAATAATGAGTGCAAGGGCCTCACTATCCCCAGTTGCTGATGTGTTTCCTTGCACTGTTGGTCAGAAACCTAGCAAGGCCAAGTATTATTTGGAAGACACGACTGAGATTTTGAGAATGTTGCAAGGCCTTGCCAATGCTTCTGAGCAGCCTGCTGGAAGTTCGTCCCACTCTTCTCATTAA 2559 0.422 MVSRSYSNLLDLTSCGSPTFGREKKRLPRVATVTGVLSELDDETSNSVGSDAPSSISQERMIIVGNQLPLKAHRKDNGTWDFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIEPSEQDDVAQFLLDTFKCVPTFLPPELFSKFYLGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVMNLLETESKVAELRNHFRGQTVMLGVDDMDIFKGISLKLLAMEQLLSQHPDKRGKVVLIQIANPARGRGKDVQEVQSETYATVKRINDTFGRSGYTPVILIDTPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKIDEILGINPFTQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMESALIVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMVQPGSISTTPNAEAVGILNSLCRDTNNCVFIVSGKERKTLNEWFSSCERLGIAAEHGYFVRTSYNAEWEACVSVPDFDWKQIAEPVMQLYMETTDGSNIEAKESALVWNYEYADRDFGSCQAKELFDHLESVLTNEPVSVKSGPNIVEVKPQGVSKGIVAERLLLTKKQKGVIPDFVLCIGDDRSDEDMFEVIMSARASLSPVADVFPCTVGQKPSKAKYYLEDTTEILRMLQGLANASEQPAGSSSHSSH 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1536g00001 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Gabi1536g00001 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Gabi1536g00001 852 Gene3D - 590 707 IPR023214 -
Gabi1536g00001 852 Gene3D - 719 851 IPR023214 -
Gabi1536g00001 852 CDD HAD_TPP 592 826 - -
Gabi1536g00001 852 Gene3D Glycogen Phosphorylase B; 53 312 - -
Gabi1536g00001 852 SUPERFAMILY HAD-like 591 837 IPR036412 -
Gabi1536g00001 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Gabi1536g00001 852 CDD GT20_TPS 60 544 IPR001830 GO:0003824|GO:0005992
Gabi1536g00001 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 35 838 IPR001830 GO:0003824|GO:0005992
Gabi1536g00001 852 Pfam Glycosyltransferase family 20 60 544 IPR001830 GO:0003824|GO:0005992
Gabi1536g00001 852 NCBIfam HAD-IIB family hydrolase 593 795 IPR006379 -
Gabi1536g00001 852 NCBIfam trehalose-phosphatase 589 837 IPR003337 GO:0003824|GO:0005992
Gabi1536g00001 852 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 849 - -
Gabi1536g00001 852 Pfam Trehalose-phosphatase 594 826 IPR003337 GO:0003824|GO:0005992
Gabi1536g00001 852 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Gabi1536g00001 852 Gene3D Glycogen Phosphorylase B; 313 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1536g00001 Gabi-Chr1536 13772 17227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1536g00001 1 837 Trehalose Biosynthesis Gene Families AT4G17770 79.048 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1536g00001 K16055 - gmx:100782799 1602.42