Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1535g00012 ATGAAAATTAACATAATTTTCTCTTACATTTTCCTTTTGTTTACTTCCATCTCTGCTTACACTTACTTGGATTATATCAAACCAAATCTCACTGCTTCATATCTTCAATTGATTGATGACTCTGGCTCCTTCTTATTGTCTCCCAATAAAACATTCAAGGCTTCTATATTCAATCCCGGTGGTCAACAAACCAGTTTCTATCTGTGTGTCATTCATGTTGCGTCAAGCACTATCATTTGGTCTGCTAACCGGAATGCTCCCATCTCTAATTCTGGTAAAATGAGTCTAACCGTCAAAGGGATTACAGTTGCAGATAAAGATGGAAACACCAAATGGTCAACACCACCATTGAAATCACGAGCATATAAGCTTGTACTGACTGAGATGGGAAATCTTATTTTACTTGATCAGTCCAACGATTCTCTTTGGGAGAGCTTCCAATATCCAACTGACACAATTGTCATTGGACAACGTTTGCCGGTTGGAGCATCGCTGTCAAGTGCTGCATCCGATTCAGACTTGTCAACTGGAAACTACAACCTGACAATTACTGCCTCTGATGCAATACTGCAATGGTATGGACAGACATACTGGAAACTATCGACGGCTACAAACGTCTATAAGAATTCAAATGATATGGTGGAATACATGGCAATAAACAGAACAGGTTTTTATCTCTTTGGACATGATGGTATAGTGGCTGTCTTTCATGTGGGCTTGCCACTAACCAATTTTCGAATTGCAAAGTTGGCTCTCTCTGGCCAGTTTACTATTAGCAGCTTTTCTGGCACTGACTGGAAGAAGGAATTTGTGGGGCCAGATGACGGTTGTCAAACTCCCTCAGTTTGTGGCAGAGTAGGTTTATGTGCTGATGACACTACATTATCTACACCTGTTTGCTCTTGTCCCTCAAACTTCCGTGTAGACTCAGGTAATTTTGGTGGTTGTGTGCCAAGCAATGGATCTTATTCTTTGCCATTTGCTTGTGGTTCTACTGATTACCATAGTCAATCAAATTCTTCAGTTGTTTCGTTTTTGAAACTAGGGTATGGTCTGGAGTACTTTCACAATTTTTACTCTGATCCAATTATGTATGGAGTGAATTTATCTGTCTGTCAAAGTCTTTGTTCCAGTAACTGTTCCTGCTTGGGATTTTTCTATGAAAATGCATCTGGTTCTTGTTACATGATCGAAAATGAGTTGGGATCCATTCAGTCAAGAGATGCAGGTGAAAGAGACATGTTGGGCTTCATTAAAGCTATTGTTGGTGTATCTAAAATTACTAATGATGAACAAACTTATTCTCAAGAGGGTTTTCCCGTGGCTGCTGCCGTGATGTTACCTATTACTGGATTCGTTCTTTTTATGGTACTATTTTTCTTCTTGTGGAGAAGATTGAAACTGTCAAAGATGCAAGAAGTTAAATTAGGGAAAGCCAGCTCACATTCTTCAGGGGACCTGGATGCCTTCTTCATTCCGGGCTTACCTACAAGGTTTGACTATGAGGAACTTGAGGAGGCTACGGATAATTTTAAGACTCTAGTTGGGTCAGGTGGGTTTGGTGCTGTGTACAGGGGTGTACTGTCTAATAATACGGTTGTGGCTGTAAAGAAACTTGTCAATATAGGCATTCAAGGGAAAAAAGATTTTTGCACTGAGATTGCTGTTATTGGAAATATTCACCATGTTAATTTGGTCAAACTGAAAGGTTTTTGTGCTCAAGGGAGACATCGTATGTTGGTTTATGAGTACATGAATCGTGGATCCCTGGATCGCATCCTGTTTGGTGGTGGACCCGTTTTAGAATGGCAAGAGAGGCTTGATGTGGCACTTGGAACAGCACGTGGACTTGCTTACCTGCACGGTGGCTGTGAGCTGAAGATAATTCATTGTGATATCAAACCCGAGAACATTCTTTTGCAAGATAACTTTCAGGCTAAGATATCTGATTTTGGACTCTCGAAATTCCTTAGCCCTGAAGAGTCTGGTTTATTCACAACAATGAGAGGCACTCGTGGTTATCTTGCTCCAGAGTGGCTTACAAACTCTGCAATTTCAGAAAAGACTGATGTCTATAGTTTTGGAATGGTGCTGCTCGAACTGATCAGTGGAAGGAAGAATTGTTTTTTTAGGTCAAGAAGCCATAGTGTAGATGACAGCAACAGTGGTCGAGGCCATTCACCAACCTCATCAACAACTGGATTGGTTTATTTTCCTCTATTTGCTTTAGAGATGCATGAACAAGGGAGTTACCTGGAGTTGGCTGACCCAAGGCTAGAAGGACGGGTTACAAATGATGAGGTGGAGAAACTAGTTCGCATTGCCTTGTGCTGTGTTCATGAAGAACCACCACTTAGGCCAAATATGGCTACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCGCAGCCAAGGATGGAATCTTTGAACTTCCTGCGCTTTTATGGCCGTAGGTTTACTGAGGCTTCCATGATTGCAGAGGAAAATGAGTCTGGCTCTATGATGCATCAACAAGCACGTAATTCTACAAGCATGACAAGTGGTTCACAAACTGGTTTTTCTTACATATCTTCACAAAATATCTCAGGGCCAAGATAG 2601 0.4133 MKINIIFSYIFLLFTSISAYTYLDYIKPNLTASYLQLIDDSGSFLLSPNKTFKASIFNPGGQQTSFYLCVIHVASSTIIWSANRNAPISNSGKMSLTVKGITVADKDGNTKWSTPPLKSRAYKLVLTEMGNLILLDQSNDSLWESFQYPTDTIVIGQRLPVGASLSSAASDSDLSTGNYNLTITASDAILQWYGQTYWKLSTATNVYKNSNDMVEYMAINRTGFYLFGHDGIVAVFHVGLPLTNFRIAKLALSGQFTISSFSGTDWKKEFVGPDDGCQTPSVCGRVGLCADDTTLSTPVCSCPSNFRVDSGNFGGCVPSNGSYSLPFACGSTDYHSQSNSSVVSFLKLGYGLEYFHNFYSDPIMYGVNLSVCQSLCSSNCSCLGFFYENASGSCYMIENELGSIQSRDAGERDMLGFIKAIVGVSKITNDEQTYSQEGFPVAAAVMLPITGFVLFMVLFFFLWRRLKLSKMQEVKLGKASSHSSGDLDAFFIPGLPTRFDYEELEEATDNFKTLVGSGGFGAVYRGVLSNNTVVAVKKLVNIGIQGKKDFCTEIAVIGNIHHVNLVKLKGFCAQGRHRMLVYEYMNRGSLDRILFGGGPVLEWQERLDVALGTARGLAYLHGGCELKIIHCDIKPENILLQDNFQAKISDFGLSKFLSPEESGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELISGRKNCFFRSRSHSVDDSNSGRGHSPTSSTTGLVYFPLFALEMHEQGSYLELADPRLEGRVTNDEVEKLVRIALCCVHEEPPLRPNMATVVGMLEGGTPLPQPRMESLNFLRFYGRRFTEASMIAEENESGSMMHQQARNSTSMTSGSQTGFSYISSQNISGPR 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1535g00012 866 Gene3D - 38 148 IPR036426 -
Gabi1535g00012 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gabi1535g00012 866 PIRSF SRK 1 851 IPR024171 GO:0004674
Gabi1535g00012 866 CDD STKc_IRAK 515 798 - -
Gabi1535g00012 866 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 202 IPR036426 -
Gabi1535g00012 866 CDD PAN_AP_plant 332 419 - -
Gabi1535g00012 866 Gene3D Transferase(Phosphotransferase) domain 1 585 802 - -
Gabi1535g00012 866 SMART serkin_6 509 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1535g00012 866 ProSiteProfiles Protein kinase domain profile. 509 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1535g00012 866 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Gabi1535g00012 866 Gene3D Phosphorylase Kinase; domain 1 490 584 - -
Gabi1535g00012 866 FunFam Serine/threonine-protein kinase 585 804 - -
Gabi1535g00012 866 ProSitePatterns Protein kinases ATP-binding region signature. 515 538 IPR017441 GO:0005524
Gabi1535g00012 866 MobiDBLite consensus disorder prediction 829 866 - -
Gabi1535g00012 866 CDD B_lectin 41 149 IPR001480 -
Gabi1535g00012 866 ProSiteProfiles PAN/Apple domain profile. 329 421 IPR003609 -
Gabi1535g00012 866 ProSiteProfiles Bulb-type lectin domain profile. 29 147 IPR001480 -
Gabi1535g00012 866 Pfam S-locus glycoprotein domain 248 307 IPR000858 GO:0048544
Gabi1535g00012 866 SMART blect_4 36 149 IPR001480 -
Gabi1535g00012 866 Pfam D-mannose binding lectin 77 160 IPR001480 -
Gabi1535g00012 866 FunFam serine/threonine-protein kinase PBS1-like 478 584 - -
Gabi1535g00012 866 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 805 - -
Gabi1535g00012 866 Pfam Protein kinase domain 512 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1535g00012 Gabi-Chr1535 210379 212979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1535g00012 492 805 Receptor kinase-like Gene Family AT5G20050 42.202 1.19e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi1535g00012 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1535g00012 - - psat:127084110 1248.42