Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1535g00010 ATGACGAGCTTAGTCAGCTCAACAACTATGGCTATCACCATGGACATGGACATGGACATGGACCTTGACTTCTCCGGATACAGCACCATCACCAGCACCCCAACTTCCGACGATGACTACGGTTGCAACTGGAACCACTGGTCCCCCGTCGTCAACTGGGACGCCATCACCGGAGGCCAAGACGATTTCCACAACCTAATCGATTCCATGATGGACGTCGACGGAGTGACGCTCAGCCCCGATTACGGCGCCAGCAACTCCGTCTCCACCACCGAGGAGGACGAGGACGTCGAGGTGGAACCACCACCACAACCAGCAGCAGTCGCCGGCGACGATTTCAAGGGCCTGAGGCTCGTGCACCTCCTGATGGCCGCGGCGGAGGCTCTCACCGGCGCAAACAAGAGCCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCAAGCCCACACCCACGGCACCAACATGGAGAGACTCGCGGCGTATTTCACGGACGCGCTACAGAGTCTGCTAGAAGGCGCAGGGGGTGCGCACAATAACCACCACCACCACAACAAACATTACCTCACGTGCGGGCCCCACCATCGCGACGAGCATCAACAAAACGACATGCTCGCAGCGTTCCAACTGCTTCAGGACGTGTCACCTTATGTCAAGTTCGGTCACTTCACCGCTAACCAGGCCATCCTTGAGGCCGTGGTCCACGAGCGTCGCGTCCACATCGTAGACTATGACATCATGGAAGGGGTCCAATGGGCCTCCCTTATACAGGCCCTCGCCTCAGACAAAAACGGCCCATCGGGCCCACATCTCCGCATCACCGCATTGTCGCGAACCGGCACCGGACGGAGATCCATCGCCACCGTGCAAGAGACCGGGCGCCGGTTGACGGCGTTCGCTGCCTCCTTGAACCAGCCGTTTTCGTTTCACCACTGCAGGTTGGACTCCGACGAAACGTTTCGTCCCTCCGCGCTGAAGCTTGTTCGAGGAGAGGCCTTGGTGTTCAACTGCATGCTGAACCTGCCGCACCTGAGCTACCGGTCGCCAGATTCGGTTGCGTCGTTCCTTGACGGAGCGAAGGCGTTGAGACCGAGGCTGGTGACGCTGGTGGAGGAGGAGATGGTGCCGGTTGTTGGTGGTGACGTGGGATTCGTGGTTCGGTTCATGGAGTCGCTCCACCATTACTCGGCGGTGTTTGATTCGTTGGAGGGTGGGTTTCCGATGCAGAGCCGGGCCAGGACATTGGTGGAGCGGGTGTTCCTTGGGCCCAGGATAGCGGGCTCGTTGGGCCGGATATACAGAACGGGTGGAGGGGAGGAGAGAGGGTCGTGGGGGGAGTGGTTGGGTGCGGCGGGGTTCAAGGGAGTTCCTATAAGCTTCGCGAATCAAAGTCAAGCGAGGCTGTTGATGGGTCTTTTCAACCATGGGTATGGGGTGGAGCAGTTGAATGCTAATAAATTGGTGTTGGATTGGAAATCAAAGCGTTTGCTTTCTGCCTCCCTTTGGACTTGTAGTTCTTCCCAATCGGATTTGTAG 1548 0.5833 MTSLVSSTTMAITMDMDMDMDLDFSGYSTITSTPTSDDDYGCNWNHWSPVVNWDAITGGQDDFHNLIDSMMDVDGVTLSPDYGASNSVSTTEEDEDVEVEPPPQPAAVAGDDFKGLRLVHLLMAAAEALTGANKSRDLARVILVRLKELVSQAHTHGTNMERLAAYFTDALQSLLEGAGGAHNNHHHHNKHYLTCGPHHRDEHQQNDMLAAFQLLQDVSPYVKFGHFTANQAILEAVVHERRVHIVDYDIMEGVQWASLIQALASDKNGPSGPHLRITALSRTGTGRRSIATVQETGRRLTAFAASLNQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRSPDSVASFLDGAKALRPRLVTLVEEEMVPVVGGDVGFVVRFMESLHHYSAVFDSLEGGFPMQSRARTLVERVFLGPRIAGSLGRIYRTGGGEERGSWGEWLGAAGFKGVPISFANQSQARLLMGLFNHGYGVEQLNANKLVLDWKSKRLLSASLWTCSSSQSDL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1535g00010 515 Pfam GRAS domain family 118 507 IPR005202 -
Gabi1535g00010 515 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 94 502 IPR005202 -
Gabi1535g00010 515 MobiDBLite consensus disorder prediction 81 104 - -
Gabi1535g00010 515 ProSiteProfiles GRAS family profile. 109 507 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1535g00010 Gabi-Chr1535 160847 162757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1535g00010 111 506 GRAS Transcription Factor Family AT5G41920 34.815 6.88e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi1535g00010 GRAS 6.4e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1535g00010 - - gmx:100787926 721.079