Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1535g00007 ATGTCATTAAGCCCTCCAAGAGAGAGAAGCAATGGCCAACCCAGGAGGAACTTCCAACTCTACTGGTGCTTCCAGTGCAATCGCATGGTTCGGTTCGCACCCGATAACCCCTCCGAGATCACGTGCCCGCGATGCTTTGGCCAATTCATCTGCGAGTTAAACATGCCAAGGCCAAGACTCGTCGTGGATTTCACCGCCCACGATCCTTCCCCAGAAGCGCGTTTGCTGGAAGCGCTTTCTCTCATGCTGGACCCACCCATCCGACGTCGCTTCGCCGACGAAGGCGAAAACGAAACCCAACGCCCACGCCCACGCCCACGCTGGGTTCACCGGCGGCCCCACACAGCAGAACCAGACCCAATTGGCGAGAGAGTCAGTCCTATCCCACGCGGTGTCGATTCAAGAGACTACCTTTTCGGGCCAGGTCTGAACGAACTCATAGACCAGTTGACGGAGAATGACCGGCAGGGTCCGCCGCCGGTGCCGGAAAGTGCTATCAACGCAATCCCCACGGTGAAAATATTGAGCACGCATTTGAAGGAGAATTCTCATTGCCCTGTTTGCCAAGAGGAATTTGAAGTTGGTGGCGAAGCAAGGGAACTTCCATGCAAGCATATATACCATTCTGATTGCATTGTTCCTTGGCTTAGGCTTCACAATTCTTGCCCCGTTTGCCGGGTAGAGGTTCCGGTGGTGTCCGATAATGAAGAAGAAGAAGAGAGTAGTGAGGGTGGAGAAGGCAGGTTCAGGAGGTGCTTGAGGTGGACACGCCTTGCTTCTCTTTGGCCCTTTCATGGAAGGTATCATCATCGACGGGTTCATCCTGGAGGTGGAAGAGGCAATGTTGCTGCTGCTGATTCTTCAAGGGGTGATAATTAA 879 0.5392 MSLSPPRERSNGQPRRNFQLYWCFQCNRMVRFAPDNPSEITCPRCFGQFICELNMPRPRLVVDFTAHDPSPEARLLEALSLMLDPPIRRRFADEGENETQRPRPRPRWVHRRPHTAEPDPIGERVSPIPRGVDSRDYLFGPGLNELIDQLTENDRQGPPPVPESAINAIPTVKILSTHLKENSHCPVCQEEFEVGGEARELPCKHIYHSDCIVPWLRLHNSCPVCRVEVPVVSDNEEEEESSEGGEGRFRRCLRWTRLASLWPFHGRYHHRRVHPGGGRGNVAAADSSRGDN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1535g00007 292 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Gabi1535g00007 292 SUPERFAMILY RING/U-box 165 232 - -
Gabi1535g00007 292 MobiDBLite consensus disorder prediction 90 129 - -
Gabi1535g00007 292 SMART ring_2 185 225 IPR001841 -
Gabi1535g00007 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 230 - -
Gabi1535g00007 292 Pfam Ring finger domain 184 226 IPR001841 -
Gabi1535g00007 292 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
Gabi1535g00007 292 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Gabi1535g00007 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Gabi1535g00007 292 MobiDBLite consensus disorder prediction 90 104 - -
Gabi1535g00007 292 MobiDBLite consensus disorder prediction 273 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1535g00007 Gabi-Chr1535 117382 118377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1535g00007 6 264 C3H Transcription Factor Family AT1G68180 31.461 1.93e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1535g00007 K11982 - gmx:100787399 328.176