Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1535g00006 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCATCAAAGCCAATGCGATCTTTATCCTCATCATCAGGATCATCAGGATCAGATAGCAAGAAGAAGTACAAAGGAGTCAGAATGAGAAGCTGGGGTTCATGGGTGTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGCTAGGCTCTTATTCAACCCCAGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATCTCAATTTCCCTTTAAGTTCTTCACAATACATTCCTAAAGATACTGTCATGTCCCCTAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGAAAATGCCAGCACTCCTCCTTCTCCTCCTCCTGCATCAACCTCATCATCCTCGATCTCTTCCCCTTCAATGGTCTCCTCTCCCTCTGATCAAATCGATGATGATGTCTCACTGATGTCATCTTTTGAGGCCTACACAAGCTGTGATCAAGCAAATGAATCAATGGCTATGATGGAACCTTGGTACAGTTTTGATGGTGTACAATCCCCTAAATATGTTGATCAGATGTTAAATGGTGCTTTCTTTGATATTGATTCATCCCATCTACTTGATGATCTGTACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTAA 678 0.4233 MVKSEHKIKTEPSKPMRSLSSSSGSSGSDSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQYIPKDTVMSPKSIQRVAAAAANSFIENASTPPSPPPASTSSSSISSPSMVSSPSDQIDDDVSLMSSFEAYTSCDQANESMAMMEPWYSFDGVQSPKYVDQMLNGAFFDIDSSHLLDDLYEESDIRLWSFC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1535g00006 225 Gene3D AP2/ERF domain 32 92 IPR036955 GO:0003700|GO:0006355
Gabi1535g00006 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 168 - -
Gabi1535g00006 225 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Gabi1535g00006 225 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Gabi1535g00006 225 MobiDBLite consensus disorder prediction 134 151 - -
Gabi1535g00006 225 MobiDBLite consensus disorder prediction 14 30 - -
Gabi1535g00006 225 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gabi1535g00006 225 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Gabi1535g00006 225 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gabi1535g00006 225 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Gabi1535g00006 225 FunFam ethylene-responsive transcription factor ERF014-like 32 92 - -
Gabi1535g00006 225 MobiDBLite consensus disorder prediction 121 151 - -
Gabi1535g00006 225 MobiDBLite consensus disorder prediction 1 35 - -
Gabi1535g00006 225 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1535g00006 Gabi-Chr1535 102238 102915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1535g00006 1 224 AP2-EREBP Transcription Factor Family AT1G21910 47.308 2.11e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1535g00006 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1535g00006 - - gmx:100813615 326.25