Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1534g00022 ATGGAGCTTCGTTCTCGTCGACGCGTTTCCAACACCACGGTTTCCGCAGGGAAGGAGAAGCAACTGAGGGATGCCTCTGGGGATGTTGAAACTAATGGCCAGTGCAGCAATAATGCCGATGAAGGCGTTTCTGATAAATCTTCACATTCAGATTCTGATTTTGAAGATGAAGAGTTTGGTGGGAACGTCCTTCTTGACTTGAATCAAGAACCGACTTCAAGCATTTGTATTTCTGATGGAGAAGATAATGCTTCTGATTTTTCTGATGGTAGCAAGCCTTTATCTAAAAGGGGAAAGGCACAGTCCAGAAAGAAAAGAAAAATATTGAACTTGAAAACTGGAGAACCGAGTGGTGTAGAGAAAATGGTGGAGGGTGGGGATGATGAGGACTATTCAATGCTTCTCCCTCAATCAGTTCCCATCAATTTGACTATGGCGAAAAAGAAGAAAAAAGCAAAAAAAACAAGAAAGGAAGATTCTCAGACAGTGTTATTGTGGCATGCTTGGGAAGAGGAGCAAGAGAAATGGATTGACGAGAATTTATTGGAAGATGTTATCATAGATCATCAGAGTGAAGTGATGAATGAAACTGCTGAGCCATCCTCAGATCTGACTATGCCTTTGCTAAGATACCAAAATGAATGGTTAGCTTGGGCTTTGAAACAAGAAAATTCTGCAACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGGAAGACTATTCAAGCGATTGCCCTTGTCCTTGCCAAACGTGAATTCCATCAAATGAGTTGCGAACCAGATGAACCCTCACCTTCACCAGAGTCATCTAGAGTCTTGCCTATGATAAAAGGAACACTTGTGATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTCAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGGAAGAGTGCTGAACAGTTCTCGGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAGTATATGATGCCTCCTAAGGATAAGTGTCCATATTGTGGAAAATTATTTTACCAGAATAAGTTATCTTATCACCAGAGGTATTTTTGTGGGCCTGATGCTGTTAGAACAGATAAACAATCAAAGCAACTTAAGAAAAAGAAAAGAGATGTTACTAAACAGAAAATCACAGAACCAGATTGTTGGAATGGAGAATTGGAACAGGGTTTTATTAAGAAGAAGGAAGAGGAGATGCGCTGCAGAAAAGAAGACCCAGATGCAATAGGCAGGGAGAAGTCATTTCTACATGCTGTAAAATGGCAGAGGATTATATTGGATGAGGCGCACTATATAAAATCTAGACATTGCAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTATAGATGGGCATTAAGTGGTACACCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTTTGGTACGGTTTCTGCAGATAGTTCCTTATTCCTATTACCTGTGCAAGGATTGTGATTGCAGGACACTTGATCATAGCTCTTCTAAACAATGTTCAAACTGCTGCCACAGTTCTGTTAGACACTTCTGTTGGTGGAACAAATATATTGCCACACCAATTCAATCATATGGATATGGTGATTGTGGAAGAAGAGCTATGATATTGCTTAAAGACAAAATTTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCTCTTCCGCCTAGAATTGTTTCTTTGAGGCGGGATAGCCTGGATATAAAAGAGCAAGACTATTACGAATCGTTATACAATGAAAGTCAGGCTCAGTTTAATACATATGTAGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATATCTTGTGGTTTATTCTCCAACTGCAGCATTACGAGGTGGGAACTCGGCTAGTAATGGTGGTAATGTTGAACAAGCATGTGGCCTTTGTCATGAAGCAGTAGAAGATCCTGTGGTTACCTCTTGTGAGCATATTTTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCCTGGGAAAAGTATCATGCCCCTCTTGCTCTAAATTACTTACAGTTGATCTAACTTCCAACAAGGATGTTGGGGTTCATGCTGATAAAGCAACAATTAAGGGATTCAGATCCTCAAGCATTTTAAACAGAATTCAGATAGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCTTGCACAAGTCAGGTGTATCTTGCGTTCAACTGAATGGAAGCATGTCATTGGCTGCCCGAGATACTGCCATTAAGAGATTTACTGACGATCCAGACTGCAAAATTTTTCTGATGAGCTTGAAGGCTGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCATGGTGGAACCCTGCGGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCCATCAGAATTGTGAGATTTGTCATTGAAAACACCATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACAATAGGCGGCTCTTCTGAGGCTTTGGGGAAATTGACGGAGGCTGACTTAAAATTTCTCTTTGTCACCTAA 2766 0.4118 MELRSRRRVSNTTVSAGKEKQLRDASGDVETNGQCSNNADEGVSDKSSHSDSDFEDEEFGGNVLLDLNQEPTSSICISDGEDNASDFSDGSKPLSKRGKAQSRKKRKILNLKTGEPSGVEKMVEGGDDEDYSMLLPQSVPINLTMAKKKKKAKKTRKEDSQTVLLWHAWEEEQEKWIDENLLEDVIIDHQSEVMNETAEPSSDLTMPLLRYQNEWLAWALKQENSATRGGILADEMGMGKTIQAIALVLAKREFHQMSCEPDEPSPSPESSRVLPMIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGARRGKSAEQFSEYDFVITTYSIVESEYRKYMMPPKDKCPYCGKLFYQNKLSYHQRYFCGPDAVRTDKQSKQLKKKKRDVTKQKITEPDCWNGELEQGFIKKKEEEMRCRKEDPDAIGREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHSSSKQCSNCCHSSVRHFCWWNKYIATPIQSYGYGDCGRRAMILLKDKILKNIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALRGGNSASNGGNVEQACGLCHEAVEDPVVTSCEHIFCKACLIDFSASLGKVSCPSCSKLLTVDLTSNKDVGVHADKATIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDTAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1534g00022 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 568 IPR027417 -
Gabi1534g00022 921 Gene3D - 580 919 IPR027417 -
Gabi1534g00022 921 SMART ring_2 667 706 IPR001841 -
Gabi1534g00022 921 Gene3D - 377 534 IPR038718 -
Gabi1534g00022 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 911 IPR001650 -
Gabi1534g00022 921 MobiDBLite consensus disorder prediction 1 105 - -
Gabi1534g00022 921 ProSitePatterns Zinc finger RING-type signature. 682 691 IPR017907 -
Gabi1534g00022 921 CDD SF2_C_SNF 749 876 - -
Gabi1534g00022 921 Pfam Helicase conserved C-terminal domain 751 865 IPR001650 -
Gabi1534g00022 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 734 IPR013083 -
Gabi1534g00022 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 495 IPR014001 -
Gabi1534g00022 921 MobiDBLite consensus disorder prediction 27 43 - -
Gabi1534g00022 921 SMART ultradead3 204 513 IPR014001 -
Gabi1534g00022 921 Pfam Zinc finger, C3HC4 type (RING finger) 667 706 IPR018957 GO:0046872
Gabi1534g00022 921 Pfam SNF2-related domain 222 643 IPR000330 GO:0005524|GO:0140658
Gabi1534g00022 921 ProSiteProfiles Zinc finger RING-type profile. 667 707 IPR001841 -
Gabi1534g00022 921 Gene3D - 210 349 IPR038718 -
Gabi1534g00022 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 39 919 - -
Gabi1534g00022 921 MobiDBLite consensus disorder prediction 66 81 - -
Gabi1534g00022 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 919 IPR027417 -
Gabi1534g00022 921 SMART helicmild6 782 865 IPR001650 -
Gabi1534g00022 921 SUPERFAMILY RING/U-box 664 711 - -
Gabi1534g00022 921 Coils Coil 738 758 - -
Gabi1534g00022 921 CDD DEXDc_SHPRH-like 208 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1534g00022 Gabi-Chr1534 211155 220232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1534g00022 135 921 RAD5 or RAD16-like Gene Family AT1G05120 67.130 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1534g00022 SNF2_N 2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1534g00022 K15083 - gmx:100798333 1358.58