Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1534g00021 ATGGAGCTTCGTTCTCGTCGACGCGTTTCCAACACCACGGTTTCCGGGAAGGAGAAGCAACTGAGGGATGCCTCTGGGGATGTTGAAACTAATGGCCAGTGCAGCAATAATGCCGATGAAGGCGTTTCTGATAAATCTTCACATTCAGATTCTGATTTTGAAGATGAAGAGTTTGGTGGGAACGTCCTTCTTGACTTGAATCAAGAACCGACTTCAAGCATTTGTATTTCTGATGGAGAAGATAATGCTTCTGATTTTTCTGATGGTAGCAAGCCTTTATCTAAAAGGGGAAAGGCACAGTCCAGAAAGAAAAGAAAAATATTGAACTTGAAAACTGGAGAACCGAGTGGTGTAGAGAAAATGGTGGAGGGTGGGGATGATGAGGACTATTCAATGCTTCTCCCTCAATCAGTTCCCATCAATTTGACTATGGCGAAAAAGAAGAAAAAAGCAAAAAAAACAAGAAAGGAAGATTCTCAGACAGTGTTATTGTGGCATGCTTGGGAAGAGGAGCAAGAGAAATGGATTGACGAGAATTTATTGGAAGATGTTATCATAGATCATCAGAGTGAAGTGATGAATGAAACTGCTGAGCCATCCTCAGATCTGACTATGCCTTTGCTAAGATACCAAAATGAATGGTTAGCTTGGGCTTTGAAACAAGAAAATTCTGCAACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGGAAGACTATTCAAGCGATTGCCCTTGTCCTTGCCAAACGTGAATTCCATCAAATGAGTTGCGAACCAGATGAACCCTCACCTTCACCAGAGTCATCTAGAGTCTTGCCTATGATAAAAGGAACACTTGTGATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTCAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGGAAGAGTGCTGAACAGTTCTCGGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAGTATATGATGCCTCCTAAGGATAAGTGTCCATATTGTGGAAAATTATTTTACCAGAATAAGTTATCTTATCACCAGAGGTATTTTTGTGGGCCTGATGCTGTTAGAACAGATAAACAATCAAAGCAACTTAAGAAAAAGAAAAGAGATGTTACTAAACAGAAAATCACAGAACCAGATTGTTGGAATGGAGAATTGGAACAGGGTTTTATTAAGAAGAAGGAAGAGGAGATGCGCTGCAGAAAAGAAGACCCAGATGCAATAGGCAGGGAGAAGTCATTTCTACATGCTGTAAAATGGCAGAGGATTATATTGGATGAGGCGCACTATATAAAATCTAGACATTGCAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTATAGATGGGCATTAAGTGGTACACCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTTTGGTACGGTTTCTGCAGATAGTTCCTTATTCCTATTACCTGTGCAAGGATTGTGATTGCAGGACACTTGATCATAGCTCTTCTAAACAATGTTCAAACTGCTGCCACAGTTCTGTTAGACACTTCTGTTGGTGGAACAAATATATTGCCACACCAATTCAATCATATGGATATGGTGATTGTGGAAGAAGAGCTATGATATTGCTTAAAGACAAAATTTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCTCTTCCGCCTAGAATTGTTTCTTTGAGGCGGGATAGCCTGGATATAAAAGAGCAAGACTATTACGAATCGTTATACAATGAAAGTCAGGCTCAGTTTAATACATATGTAGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATATCTTGTGGTTTATTCTCCAACTGCAGCATTACGAGGTGGGAACTCGGCTAGTAATGGTGGTAATGTTGAACAAGCATGTGGCCTTTGTCATGAAGCAGTAGAAGATCCTGTGGTTACCTCTTGTGAGCATATTTTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCCTGGGAAAAGTATCATGCCCCTCTTGCTCTAAATTACTTACAGTTGATCTAACTTCCAACAAGGATGTTGGGGTTCATGCTGATAAAGCAACAATTAAGGGATTCAGATCCTCAAGCATTTTAAACAGAATTCAGATAGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCTTGCACAAGTCAGGTGTATCTTGCGTTCAACTGAATGGAAGCATGTCATTGGCTGCCCGAGATACTGCCATTAAGAGATTTACTGACGATCCAGACTGCAAAATTTTTCTGATGAGCTTGAAGGCTGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCATGGTGGAACCCTGCGGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCCATCAGAATTGTGAGATTTGTCATTGAAAACACCATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACAATAGGCGGCTCTTCTGAGGCTTTGGGGAAATTGACGGAGGCTGACTTAAAATTTCTCTTTGTCACCTAA 2763 0.4115 MELRSRRRVSNTTVSGKEKQLRDASGDVETNGQCSNNADEGVSDKSSHSDSDFEDEEFGGNVLLDLNQEPTSSICISDGEDNASDFSDGSKPLSKRGKAQSRKKRKILNLKTGEPSGVEKMVEGGDDEDYSMLLPQSVPINLTMAKKKKKAKKTRKEDSQTVLLWHAWEEEQEKWIDENLLEDVIIDHQSEVMNETAEPSSDLTMPLLRYQNEWLAWALKQENSATRGGILADEMGMGKTIQAIALVLAKREFHQMSCEPDEPSPSPESSRVLPMIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGARRGKSAEQFSEYDFVITTYSIVESEYRKYMMPPKDKCPYCGKLFYQNKLSYHQRYFCGPDAVRTDKQSKQLKKKKRDVTKQKITEPDCWNGELEQGFIKKKEEEMRCRKEDPDAIGREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHSSSKQCSNCCHSSVRHFCWWNKYIATPIQSYGYGDCGRRAMILLKDKILKNIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALRGGNSASNGGNVEQACGLCHEAVEDPVVTSCEHIFCKACLIDFSASLGKVSCPSCSKLLTVDLTSNKDVGVHADKATIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDTAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1534g00021 920 ProSitePatterns Zinc finger RING-type signature. 681 690 IPR017907 -
Gabi1534g00021 920 Gene3D - 579 918 IPR027417 -
Gabi1534g00021 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 494 IPR014001 -
Gabi1534g00021 920 SMART ring_2 666 705 IPR001841 -
Gabi1534g00021 920 Coils Coil 737 757 - -
Gabi1534g00021 920 Pfam SNF2-related domain 221 642 IPR000330 GO:0005524|GO:0140658
Gabi1534g00021 920 CDD DEXDc_SHPRH-like 207 567 - -
Gabi1534g00021 920 CDD SF2_C_SNF 748 875 - -
Gabi1534g00021 920 ProSiteProfiles Zinc finger RING-type profile. 666 706 IPR001841 -
Gabi1534g00021 920 Pfam Zinc finger, C3HC4 type (RING finger) 666 705 IPR018957 GO:0046872
Gabi1534g00021 920 Gene3D - 209 348 IPR038718 -
Gabi1534g00021 920 MobiDBLite consensus disorder prediction 26 42 - -
Gabi1534g00021 920 MobiDBLite consensus disorder prediction 1 105 - -
Gabi1534g00021 920 Pfam Helicase conserved C-terminal domain 750 864 IPR001650 -
Gabi1534g00021 920 SMART ultradead3 203 512 IPR014001 -
Gabi1534g00021 920 MobiDBLite consensus disorder prediction 65 80 - -
Gabi1534g00021 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 910 IPR001650 -
Gabi1534g00021 920 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 42 918 - -
Gabi1534g00021 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 567 IPR027417 -
Gabi1534g00021 920 SMART helicmild6 781 864 IPR001650 -
Gabi1534g00021 920 Gene3D - 376 533 IPR038718 -
Gabi1534g00021 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 733 IPR013083 -
Gabi1534g00021 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 918 IPR027417 -
Gabi1534g00021 920 SUPERFAMILY RING/U-box 663 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1534g00021 Gabi-Chr1534 211155 220232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1534g00021 134 920 RAD5 or RAD16-like Gene Family AT1G05120 67.130 0.0 1091
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1534g00021 SNF2_N 2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1534g00021 K15083 - gmx:100798333 1363.21