Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1534g00016 ATGGAGTGGAATAGAGGCCACCCCATAGGCCATGGTTCATCGGCCACCGTCTCCCTCGCCACTAAATCTGGCGGCATCTTCGCCGTGAAGTCATCGGAGCTATCTCAGTCAAAGCCTTTGAAGAGAGAACAGAGAATTCTCTCTTCTTTATGTAGTCCTTATGTGATAACCTACAAAGGGTGTGACATTACCATGGAAAACAACACGCTCTTGTACAATCTCTTCATGGAGCACATGCCCTTTGGCACGCTTGTTCAGGAAACTCGCCGGCACGGTGGCCGGCTCGACGAGCCCGCGATAGCTTGCTACACAAGGCAAGTTATGCTGGGGCTAGAGTATTTGCATTCAAATGGGTTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATTGGTGAAGATGGGGCTAAAGTTTGTGACTTTGGATGTGCTAGGAGTGTTAACTATGCCGCGTCTGTGGCGCCGCCGCCAATCGGTGGCACGCCGATTTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAAGGTTGTCCTTGTGATATATGGTCACTTGGGTGCACTGTGATTGAAATGGCCACTGGTGCTTTACCTTGGTCTAATGTGGCAAACCCAGTTTCAGTTCTTTACCATATAGCATATTCCGGTGAGGTGCCTGAGATTCCTTGTTTTCTATCTGAACAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCACGAGAGAGGTGGACAACTAGCCAACTTCTGAAGCATCCCTTTCTTGTGGAATTATGTTCCAACAATAAGCAAGTTGTGGAATCTAATTCAAGTTCCCCAACAAGTATTCTTGAGCAAGGGTTTTGGAGTTCTGTGGAAGAATCAGAAAGCCTTGGCAATTTGATTCAAAAAACATGTTTTCGAAAATCTCCTGCTGGCAGGGTCAGAATGTTAGGTTTGTGTTCAGGTGAACCTTGTTGGGCAGGGCATAATGATGATGATGATGAGAATTGGATCACAATAAGAGGGAATGAGGGAAGGGGTGAAGTTGAAGCTTTTGACAATTGTGGGTCTGAGACAGCTTCAACTAGTGGTGTGTCGGCTCTGAAAGAGTTGGTAAAAAGCAATGTCAGTGATAGATTTAGTGGGCATTTTTGTCAGGATCACAATTGTAGGGATGCTAGTGTTGTAGTTAGTAATCTCAATTTTGAGAATGGCATTGCTAAGATGCTACTCCATTCAACATTAGATTTTTTATAA 1239 0.4576 MEWNRGHPIGHGSSATVSLATKSGGIFAVKSSELSQSKPLKREQRILSSLCSPYVITYKGCDITMENNTLLYNLFMEHMPFGTLVQETRRHGGRLDEPAIACYTRQVMLGLEYLHSNGLVHCDIKGANILIGEDGAKVCDFGCARSVNYAASVAPPPIGGTPIFMAPEVARGEEQGCPCDIWSLGCTVIEMATGALPWSNVANPVSVLYHIAYSGEVPEIPCFLSEQAKDFLGKCLRRNPRERWTTSQLLKHPFLVELCSNNKQVVESNSSSPTSILEQGFWSSVEESESLGNLIQKTCFRKSPAGRVRMLGLCSGEPCWAGHNDDDDENWITIRGNEGRGEVEAFDNCGSETASTSGVSALKELVKSNVSDRFSGHFCQDHNCRDASVVVSNLNFENGIAKMLLHSTLDFL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1534g00016 412 FunFam Mitogen-activated protein kinase kinase kinase 17 2 307 - -
Gabi1534g00016 412 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1534g00016 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 347 - -
Gabi1534g00016 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gabi1534g00016 412 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Gabi1534g00016 412 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1534g00016 412 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1534g00016 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Gabi1534g00016 412 CDD STKc_MAPKKK 2 255 - -
Gabi1534g00016 412 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1534g00016 Gabi-Chr1534 177904 179142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1534g00016 1 337 MAP Kinase Kinase Kinase AT1G05100 51.282 1.49e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi1534g00016 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1534g00016 K20716 - gmx:100819665 518.079