LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1534g00015	ATGGTTAGAGGGGGTGGACTCTTCATGGATTCAGATCCAATTGGGAACTTCTTTCTCCACAAACCAATTGTTCTAAACTCTTTCCCTGAAGACATAAACAACCTCAAGTGGAAACATAGTCATAGTCCCAACAACAACAACAACAACAACAACAACATGGAAGCCACAATTAGCAGCACCAAGGGATCTTCACCCAAACACAGCAGCACCATACCCTTCCAAGTAAACCTTAACTGTTCTACAGACAACCATGCCTCTCCATCATCATCTCATGACAACAATAGAACAGAAATGGACTTCTTCACTGACAAGAACAACAACCATGATAAGGTTTCCTCTGCCTCTTTGCCTGACAATGATCATACACATGATCATTCCACCACTCCACCTATGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACTAGCAGTGATCAATCTATGGTGGATGACGATGTATCACCTAATTCAGAAGACAGAAGAACTAAGAACGAGCTGGCTGTTCTTCAGGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATCGGTTGAGGGACATGCTTGATCAGCTTAATACCAATTACAATGCTCTTCAGATGCATTTGATGAATTTGATGCAGGACCAGAAGACTGAGGATGCTGAAGAACAAGTGTTTGATGGAAAATTAAAAGAGAAGAAGCAAGTTGAGCGTGGTGGTGTATTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGACTACTAATGCTGACACTGATGAACCCTCTTCTTCATCACTGGAAAGAACTCAGGATCAGTCAGGATCACCAGGGAATAACATAGAAGTGGCTTCGAAGGAATTAGGCACAAGTAAGAATGGTAAGAATGTTAGTGATGAAGGACTTGTGTATGATCAAGATAAGAAGGAATTTGATATGGGGATTGAAAGAGATGATAGCCTCTCAGGTCAGGCTTTTGCTGCTGATAAAGTTCCAAGGTTCAGTCCTCCAAAAAATGTTGATCAAGCAGAGGCCACAATGAGGAAGGCAAGAGTTTCAGTTAGAGTTCGATCAGAGGCACCAATGATCACTGATGGGTGTCAATGGAGAAAGTATGGACAGAAAATGGCCAAAGGAAACCCATGCCCTCGAGCTTATTATAGGTGCACTATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACAGAACTGTACTTATTACAACATATGAAGGAAATCACAATCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACAACATCATCAGCTGCAAGAATGTTGCTTTCAGGATCAATGTCAAGCAATGATGGACTAATGAATGCAAACTTCCTAACAAGGACACTGCTTCCATGTTCTTCAAGCATGGCAACTATCTCAGCATCTGCTCCATTCCCAACAGTTACATTGGACTTAACTCAATCTCCAAACCCTCTACAGTTCCCAAGGCCTCCAAATCAGTTACAAATTCCATTCCCTCAGAATTTTGCAAATTCACCAGCATCATTAATGCCTCAGATATTTGGTCAAGCACTCTATAACCAATCAAAGTTTTCTGGTTTACAAATGTCTCAAGATGCAGACCCTTCAGTACAATTGGGTAATAATCACCCACAACAAGCACCACCACAACTTGCTGATACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAGCCAAACAACAATGGTACTAACAATAATGGCAACAACAGCAATGGCAATATCACAAGCAGTGACAATAGCAATGGAAAGCAATAA	1836	0.4227	MVRGGGLFMDSDPIGNFFLHKPIVLNSFPEDINNLKWKHSHSPNNNNNNNNNMEATISSTKGSSPKHSSTIPFQVNLNCSTDNHASPSSSHDNNRTEMDFFTDKNNNHDKVSSASLPDNDHTHDHSTTPPMLEFKVNTGLNLLTTNTSSDQSMVDDDVSPNSEDRRTKNELAVLQAELERMKVENHRLRDMLDQLNTNYNALQMHLMNLMQDQKTEDAEEQVFDGKLKEKKQVERGGVLVPRQFMDLGLTTNADTDEPSSSSLERTQDQSGSPGNNIEVASKELGTSKNGKNVSDEGLVYDQDKKEFDMGIERDDSLSGQAFAADKVPRFSPPKNVDQAEATMRKARVSVRVRSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSNDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRPPNQLQIPFPQNFANSPASLMPQIFGQALYNQSKFSGLQMSQDADPSVQLGNNHPQQAPPQLADTVSAAIAADPNFTAALAAAITSIIGGAQPNNNGTNNNGNNSNGNITSSDNSNGKQ	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	114	128	-	-
	Gabi1534g00015	611	ProSiteProfiles	WRKY domain profile.	354	420	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	586	611	-	-
	Gabi1534g00015	611	Coils	Coil	164	212	-	-
	Gabi1534g00015	611	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	144	595	IPR044810	GO:0003700
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	39	95	-	-
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	248	293	-	-
	Gabi1534g00015	611	Pfam	WRKY DNA -binding domain	361	418	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	530	553	-	-
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	246	295	-	-
	Gabi1534g00015	611	Gene3D	WRKY domain	344	421	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	145	167	-	-
	Gabi1534g00015	611	SUPERFAMILY	WRKY DNA-binding domain	352	420	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi1534g00015	611	SMART	WRKY_cls	359	419	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi1534g00015	611	MobiDBLite	consensus disorder prediction	39	131	-	-
	Gabi1534g00015	611	FunFam	probable WRKY transcription factor 31	344	421	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1534g00015	Gabi-Chr1534	146130	148476	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1534g00015	82	595	WRKY Transcription Factor Family	AT1G62300	48.588	5.21e-134	401

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi1534g00015		WRKY	4.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1534g00015	-		-	qsa:O6P43_028660	752.666