Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1534g00004 ATGTTTAACGGTATGATGGATCCTGATATGATCCGAATGGCTCAGCAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGTTGATGAGGATGGCCTCGGAAAGCATGAAGAACATGAGTCCTGAAGACTTTAAAATTGCTGCCGAACAGTTAAAGCATACACGTCCAGAAGAAATGGCTGAGATTGGTGAGAAGATGGCCAATTCAACACCTGATGAAGTAGCAGCTATGCGTGCCCGTGTTGATGCTCAGATCAATTATCAATTAAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCATAATCAAGGAAGGTTCAATGATGCTTTACAGAAGTATATGCTTGCAAAGGAAAACATAAAAGATATTCCATCTTCTCAAAGTAGGAAACTTCTTTTGGCATGCTCACTCAACTTGATGTCCTGTTACTTGAAGACAAGGAAGTATGATGAATGCATAAATGAAGGTTCTGAGGTTTTGGCATATGATGCGAACAACCTTAAGGCTCTGTATCGAAGAGGTCAAGCATATAAGGAACTTGGTCTACTAAAGGATGCTGTTACTGATTTGAGCAAGGCACTTGAAGTGGCCCCTGATGATGACACAATTGCAGAGCTTTTTAGGGACACCAAGGAAAAGTTGACAAAGGGAGGTGGAGACCAAGCACCTGGAAGATTAGTAATTGAAGAAATAACAGAAGAAGTAGAGAATGTGCCTTCTGGAAACAACATAAGCTCTTATTTGGAAGAAACAGTGGCTCAACCAAAAAAATCTGGAGACTCCTCTAAGAGTTGTGGTACAGCTAACAATGGAAATCCAAAAACAAATACAGACAGTCTAGATGCATTGAAAAAAGATCCAGAAGCTATCAGATCATTCCAAAACTTCATTTCAAGTGCGGATCCTGCCGCTCTTGCTTCTTTGAACACTGGTCAATCCAAAGATATCTCTCCAGATATGATTAGAGGTACCACAGATATGATTAGCAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGAGACAACCCATTTTTCAGAGGAGGTTCCCCTGATTCTCCTTTCAACCCTGGATCAATTCCTCCCAATGTGACACCTGACATGTTTAAAACAGCGAGTGACATGATAAGTAAAATGTCAGCTGATGACCTTAAGAATATGTTTGAAATGGCATCCTCACTGAACGGGAAAGAATCTATTCCATCGTCAGCCGCCGTAGACAAGAATGAAAGAAATGTTTCCCAGTCAAGCTTCCCATCATCAAGTACAAATGGAACTAGTGCTTTTGGAGAATCAAGTTCTTCTCACAATGCGTTTTCGAATATGAGAAATGCTTCTCCGTCAAACTTCCCTTCCTCAAGCACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCCATGCGGCAGATGTTCACATCAATGTTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGGTTCAAGCTTTCACAAGAAGACGCAGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCAGAAAGCTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGTTGAAGGTGCAAAAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGGTCTTAGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGGTTGGGCTTCATTGGTAGGTAG 1767 0.4165 MFNGMMDPDMIRMAQQQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSPEDFKIAAEQLKHTRPEEMAEIGEKMANSTPDEVAAMRARVDAQINYQLNAAEMLKKQGNELHNQGRFNDALQKYMLAKENIKDIPSSQSRKLLLACSLNLMSCYLKTRKYDECINEGSEVLAYDANNLKALYRRGQAYKELGLLKDAVTDLSKALEVAPDDDTIAELFRDTKEKLTKGGGDQAPGRLVIEEITEEVENVPSGNNISSYLEETVAQPKKSGDSSKSCGTANNGNPKTNTDSLDALKKDPEAIRSFQNFISSADPAALASLNTGQSKDISPDMIRGTTDMISKMSPEELQKMLDMASSFQGDNPFFRGGSPDSPFNPGSIPPNVTPDMFKTASDMISKMSADDLKNMFEMASSLNGKESIPSSAAVDKNERNVSQSSFPSSSTNGTSAFGESSSSHNAFSNMRNASPSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMFKNMSPEMMANMGEQFGFKLSQEDAAKAQQAMSSLSPESLDKMMLWADRIQRGVEGAKKTKNWLLGKPGMVLAICMLILAIILHRLGFIGR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1534g00004 588 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 363 - -
Gabi1534g00004 588 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Gabi1534g00004 588 MobiDBLite consensus disorder prediction 417 479 - -
Gabi1534g00004 588 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Gabi1534g00004 588 MobiDBLite consensus disorder prediction 264 293 - -
Gabi1534g00004 588 SUPERFAMILY TPR-like 96 220 IPR011990 GO:0005515
Gabi1534g00004 588 Gene3D Tetratricopeptide repeat domain 89 231 IPR011990 GO:0005515
Gabi1534g00004 588 SMART tpr_5 146 179 IPR019734 GO:0005515
Gabi1534g00004 588 SMART tpr_5 103 136 IPR019734 GO:0005515
Gabi1534g00004 588 SMART tpr_5 180 213 IPR019734 GO:0005515
Gabi1534g00004 588 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1534g00004 Gabi-Chr1534 29012 34304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1534g00004 99 227 Calmodulin-binding Proteins AT5G48570 33.333 1.03e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1534g00004 - - gmx:100800315 952.584