Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1533g00012 ATGCCAACACAATCCTATTCACCCAACAAGACCATGAACACACTGAATCAAATGTTTCAGAACATATTCTCAGAAAACAGTAACATCATGCTTGCAGCCATTATTTCCTTGCTCTTAGTCATCCTCTTTGTTCTGCTACTCCATCTCTATGCCAAATGGTTCTTGGCTCAGGCACAGGCACAGGCACGTGCCCGGCGGCGCCGTCGCCGGAGAACCACCGTGACAGTCTCCGACGTACTTGGCCCTGCCCGGTTTCACCATTTTCATAGCTTCAACATAGAAGACTCACCCATCTCGAGTTCCCACACCAAAGGGCTTGATTCTGCTATCATTGCTGCGATTCCATTGTTCATTTATGCAGCTTCAGAAGTAGAGGAAGGTGATGATGATGATGATGATGATGATGATGAGGTTGAACAAGAACTTGAATGTGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGAAGTGCATTGACATGTGGTTGAGTTCGCATTCAAATTGCCCAATTTGCAGAGCACCGATTGTGGGTGGGATTGTTGAGAATGATTCTCAAATGGGTTCAGTTGATGCTTCTTCAGCTTTGGTTGAGATTGTGATTGATGATATTTCAAGTTCTGAGATTAGAGAGAATGGGAACGGAGGGGTGAGTGTTTCTATTTCAGAAACTTCATCATCTTTGTTTGGGTGCTCTTTGAAGAGAATGTTAGGCAAAGTTTTCCCATCTAATTCCAATGTAAATGAATTACATGCTTGA 798 0.4361 MPTQSYSPNKTMNTLNQMFQNIFSENSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQARARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPISSSHTKGLDSAIIAAIPLFIYAASEVEEGDDDDDDDDDEVEQELECVICLSAFEDGEMGRCLPKCGHGFHVKCIDMWLSSHSNCPICRAPIVGGIVENDSQMGSVDASSALVEIVIDDISSSEIRENGNGGVSVSISETSSSLFGCSLKRMLGKVFPSNSNVNELHA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1533g00012 265 FunFam RING-H2 finger protein ATL1 91 191 - -
Gabi1533g00012 265 Pfam Ring finger domain 143 186 IPR001841 -
Gabi1533g00012 265 CDD RING-H2_EL5-like 144 186 - -
Gabi1533g00012 265 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Gabi1533g00012 265 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 190 IPR044675 -
Gabi1533g00012 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Gabi1533g00012 265 SMART ring_2 144 185 IPR001841 -
Gabi1533g00012 265 SUPERFAMILY RING/U-box 143 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1533g00012 Gabi-Chr1533 198349 199388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1533g00012 21 187 Rapid Response to Elicitors AT3G16720 35.329 5.58e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1533g00012 - - vvo:131624082 288.115