Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1533g00006 ATGGAGGATCGTTACTCCGCTGCCGTTGATCTTCACGGAGAACCAAAACAGGCTTTTTTTGGAATATTTGATGGGCATGGAGGTACAAAAGCTTCAGAATTTGCTGCACATAACTTAGAAAAGAATGTGTTGAATGAAGTGATAAGAAGGGATTCTGACTTTTTGAGAAAGGATCTTAATGGTGGCTCTTGCTGTGTAACAGCATTGATTAGGAGCGGTAACCTTGTTGTGTCCAATGCTGGTGATTGTCGTGCTGTCATTAGCAGAGGAGGTGTTGCAGAAGCCCTCACTTCTGACCACAAACCTTCAAGGGAAGATGAAAGGGACAGAATTGAGACTCAGGGTGGCTATGTTGATACATGCCGTGGTGTTTGGAGGATCCAAGGATCTCTTGCTGTTTCTAGAGGAATTGGAGATAGACACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTTTAAGAATTGAACATCAGCATGAATTGTTAATCTTAGCTTCAGATGGATTATGGGACAAGGTTAGTAATCAGGAAGCAGTGGATATTGCTCGTCCTTTTTGTGTAGGGAGCAATAGACAACAACCATTGCTGGCTTGTAAAAAGCTCGTAGAGTTATCTGTATCACGAGGCTCTGTTGATGATATAAGTGTTATGATTATCAAATTGCAGAACTATGTTTGA 684 0.4181 MEDRYSAAVDLHGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLNEVIRRDSDFLRKDLNGGSCCVTALIRSGNLVVSNAGDCRAVISRGGVAEALTSDHKPSREDERDRIETQGGYVDTCRGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKVLRIEHQHELLILASDGLWDKVSNQEAVDIARPFCVGSNRQQPLLACKKLVELSVSRGSVDDISVMIIKLQNYV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1533g00006 227 Pfam Protein phosphatase 2C 45 216 IPR001932 -
Gabi1533g00006 227 CDD PP2Cc 1 223 IPR001932 -
Gabi1533g00006 227 SUPERFAMILY PP2C-like 1 225 IPR036457 -
Gabi1533g00006 227 SMART PP2C_4 1 221 IPR001932 -
Gabi1533g00006 227 ProSitePatterns PPM-type phosphatase domain signature. 19 27 IPR000222 GO:0043169
Gabi1533g00006 227 Gene3D - 1 227 IPR036457 -
Gabi1533g00006 227 PANTHER PROTEIN PHOSPHATASE 2C 1 222 IPR015655 GO:0004722|GO:0006470
Gabi1533g00006 227 ProSiteProfiles PPM-type phosphatase domain profile. 1 223 IPR001932 -
Gabi1533g00006 227 FunFam probable protein phosphatase 2C 25 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1533g00006 Gabi-Chr1533 96923 98828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1533g00006 1 227 PP2C-type Phosphatase Gene Family AT2G30020 66.939 5.24e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1533g00006 K17506 - gmx:100818903 415.231