Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1533g00003 ATGGAGCTTTGGATCAACTACACTTCCCTCCTCATCTTGTTTTGCTTCCTATTCTTGATACTAAACATATTCAAGAGATCAAATACCAAGAAACCCACCAAAAATTTTCCACCAGGACCAAGAAAATTACCTCTTATAGGGAACATACATCAGTTTGGTGGTTCCCTACCCCATCACACACTAAGAGACATGGCAAACAAATATGGACCCTTGATGCACCTCCAACTTGGAGAGTTATCAAATGTTGTAGTTTCTTCACCAGAAATAGCTGAAGAGATTTTGAAAACACATGATGTCATCTTTTCAAACAGGCCTTTTCTTCTATCTGCCAAAATTATTTCTTATGATTCAACAAACATTGCCTATTCTCCTTATGGAGCTTATTGGAGGCAACTAAGAAAAATTTGTACCATAGAGCTATTAAGTGCTAAAAGAGTTCAATCATTCAGTTACATAAGGAAAGAAGAGGTGTCAGCACTTATCGGAACAATCTCAGCAAATGAGGGATCGGTTATCAATCTTAGCAAAGAAATTTTCTTATTGACAAATGCCATAACAGCTAGAAGTATTATTGGTAAAAAGTGCAAAGACCAAGAATCATTCATATCAAGTATAGAAGCAGTATTAAAGCTAGCAGGAGGTTTCTCTGTTGCTGATCTCTATCCTTCAATCAAAGTGCTTCCATATATTACTAGGATTAGAGCTAAATTAGAAAGGCTAAGGGATGAGATTGATAGGATACTGGACAACATCGTCAAGGAACACATAGAAAACCAAAGGAGCCATTATGAATCAGAGGAGGATCTAGTTGATGTTCTACTATCAATTCAAAAGCAAAATGACCTTGGATTGCACTTGACTGATGACAATGTCAGAGCTGTTCTTCTGGATATGTTCATTGGTGGGAGTGAGACATCATCAACAGCTGTAGAGTGGGCTATGTCAGAACTTATGAAGAATCCAAAGGTTATGCAAGAGGCACAAGCTGAAGTAAGAAGGGTATGTGGTGCCAAAGGAGATGTTGATGAGGCAGACACTCATCAACTAAAATATCTAAATTCAGTCATCAAAGAAACCTTGAGGCTGCACCCACCTCTTTCACTGTTGATTCCAAGAGAAACTAGTGAGAGTTGTGTGATCATGGGGTATCAAATACCTGCTAAGACCAAGGTCATTGTCAACTTTTGGGCAATTGGAAGAGACCCCAAGCATTGGATTGAGGCTGAAAAATTCAAACCTGAGAGATTTCTTGATAGCCCAATTGATTACAAAGGCACAGATTTTAAATACATACCGTTTGGTGCTGGAAGGAGGATATGCCCAGGAATGACATTTGCCATGCCAAATGTTGAGATACCACTTGCTAAAATGCTTTATCATTTTGATTGGAAACTTCCCAATGGAATGAACCATGAAGAATTTGATATGACAGAGTCCTTTGGTGCAACTGTGAGAAGAAAAGCTGAGCTCTACTTGGTTCCTCTTCGTTATCATCATCCTTAG 1503 0.3866 MELWINYTSLLILFCFLFLILNIFKRSNTKKPTKNFPPGPRKLPLIGNIHQFGGSLPHHTLRDMANKYGPLMHLQLGELSNVVVSSPEIAEEILKTHDVIFSNRPFLLSAKIISYDSTNIAYSPYGAYWRQLRKICTIELLSAKRVQSFSYIRKEEVSALIGTISANEGSVINLSKEIFLLTNAITARSIIGKKCKDQESFISSIEAVLKLAGGFSVADLYPSIKVLPYITRIRAKLERLRDEIDRILDNIVKEHIENQRSHYESEEDLVDVLLSIQKQNDLGLHLTDDNVRAVLLDMFIGGSETSSTAVEWAMSELMKNPKVMQEAQAEVRRVCGAKGDVDEADTHQLKYLNSVIKETLRLHPPLSLLIPRETSESCVIMGYQIPAKTKVIVNFWAIGRDPKHWIEAEKFKPERFLDSPIDYKGTDFKYIPFGAGRRICPGMTFAMPNVEIPLAKMLYHFDWKLPNGMNHEEFDMTESFGATVRRKAELYLVPLRYHHP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1533g00003 500 CDD CYP71-like 67 490 - -
Gabi1533g00003 500 Gene3D Cytochrome P450 29 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 SUPERFAMILY Cytochrome P450 37 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Gabi1533g00003 500 FunFam Cytochrome P450 71D8 29 494 - -
Gabi1533g00003 500 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PANTHER OS08G0105600 PROTEIN 59 497 - -
Gabi1533g00003 500 Coils Coil 230 257 - -
Gabi1533g00003 500 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi1533g00003 500 Pfam Cytochrome P450 37 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1533g00003 Gabi-Chr1533 30874 33090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1533g00003 1 495 Cytochrome P450 AT5G25120 40.755 3.08e-137 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1533g00003 - K23806 qsa:O6P43_021270 678.707