Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1533g00001 ATGGAAAAAAAATCAATGTTTGAATGGGAGGAGTTGAAAAAATTGAAGAAGGGCTCCAATGCAGATATCTACCTTGCTGTTATCACTGCTCCACAAGAATGGAAAGAGAATGTCGTTATTATGAAGAGTTCAAGGCCTTACTCAATGGAATCACTGCAAAAGGAAGAAAAGATAATGAGATCATTCATTGGTTGTGAAGAAATCCATCAATGCTCTTTCAGCCAATTCACTGAGGAGAAAGGTAAACTCATCTACAATCTCTCAATGGAATGTGCACTTTTTGGTTCTATGGGAGATTTAATTAGGAAGAGGGCACTCTTGGAGAGTGAAGTAAGAGTGTACACGCGTATGCTTCTCAAAGGACTTTCTCTCATTCATAAAAGTGGAATTGTTCATTGTGATCTCAATCCAGATAACATTCTTCTCTTTCCTTCATGCAACGATGAAGCAAGCTATAAAGTAAAGATTGCAAATTTTGGATTGTCCAAGACAAAAGAAGAGACAATCAAAGATAAGATCAAGTTTAGAGGGACACCGTTTTACATGTCACCAGAATCAGTTATGGGTGAGATTGAAACACCATTGGATATATGGTCTCTTGGATGCACAGTCATTGAGATGGTTACTGGGTTACCTATATGGAGTAATCTTGGAAGTAAGGCAGACTTAATGTTTAAGCTTGCTTTTCTTAAAGAAGCACCAGAGATACCTGATGGAATAAGCCACGAGTGCAAAGATTTCTTGAGCAAATGTTTCATCAAGGATCCTAGCAAAAGATGGAGCGCCAACATGCTTCTCAACCATCCTTTTCTGTTTGCTCCATATGATATGTTTAGAGGTTATGAAAGCTTTTCTATGGTTAATTCGTCATATTTCTCTTATGATTGTAATCTTGTGTCTTTCAAGGTTTAA 912 0.3739 MEKKSMFEWEELKKLKKGSNADIYLAVITAPQEWKENVVIMKSSRPYSMESLQKEEKIMRSFIGCEEIHQCSFSQFTEEKGKLIYNLSMECALFGSMGDLIRKRALLESEVRVYTRMLLKGLSLIHKSGIVHCDLNPDNILLFPSCNDEASYKVKIANFGLSKTKEETIKDKIKFRGTPFYMSPESVMGEIETPLDIWSLGCTVIEMVTGLPIWSNLGSKADLMFKLAFLKEAPEIPDGISHECKDFLSKCFIKDPSKRWSANMLLNHPFLFAPYDMFRGYESFSMVNSSYFSYDCNLVSFKV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1533g00001 303 Pfam Protein kinase domain 10 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1533g00001 303 Gene3D Transferase(Phosphotransferase) domain 1 2 293 - -
Gabi1533g00001 303 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
Gabi1533g00001 303 ProSiteProfiles Protein kinase domain profile. 9 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1533g00001 303 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 9 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1533g00001 Gabi-Chr1533 410 1321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1533g00001 7 271 MAP Kinase Kinase Kinase AT4G36950 38.462 3.59e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi1533g00001 Pkinase 7.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1533g00001 - - gmx:102667952 345.125