Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1531g00011 ATGTCAACTTTGCAGATGTCCCATGTTGATTTAGAACAAGGGAATCATCATCGTTCGGTTGTTGGAAGTGATGTGAGTCTATGCTTCTCTGATGCTGATGAGGATTCTTGCTATTCTCATTTCTATTCAACAAATGGTGGCTCTTACGATGATTGCAGCTTTGTTTGTGTTTCTGATCCTGAGGTTGTGGGTGTTCCTGATTCTGGGAGAGGTTCTTCAGTTACTGATTGTTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGACAGTCATGAGTCTGGTGCTCCCATCGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACATGTGAAATTTGTCATTCTGTTGCACGGAATGTTTATGGAGCAAATGAGGAGTCAACAGAGCATTTGAACGACACTAACAATGCTACTGCAGCAGCTGCACTCTCAACTCCTCCACCAGAAACTCGAAGATTTTGGCATGGCCACCGCTTCTTGAATTTTCTGCTTGCATGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTTAATGTGCCATCATCCTAG 672 0.4345 MSTLQMSHVDLEQGNHHRSVVGSDVSLCFSDADEDSCYSHFYSTNGGSYDDCSFVCVSDPEVVGVPDSGRGSSVTDCSVEVETRTGVPEIKVHLAKVERDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGANEESTEHLNDTNNATAAAALSTPPPETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1531g00011 223 SUPERFAMILY RING/U-box 98 156 - -
Gabi1531g00011 223 Pfam RING-variant domain 101 152 IPR011016 GO:0008270
Gabi1531g00011 223 SMART ringv_2 100 153 IPR011016 GO:0008270
Gabi1531g00011 223 PANTHER ZINC FINGER, RING-CH-TYPE 11 222 - -
Gabi1531g00011 223 CDD RING_CH-C4HC3_MARCH 101 153 - -
Gabi1531g00011 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 162 IPR013083 -
Gabi1531g00011 223 ProSiteProfiles Zinc finger RING-CH-type profile. 93 159 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1531g00011 Gabi-Chr1531 186181 189185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1531g00011 65 223 C3H Transcription Factor Family AT5G05830 61.728 7.08e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1531g00011 - - gmx:100808666 390.963